View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1273_low_22 (Length: 348)
Name: NF1273_low_22
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_22 |
 | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
| [»] scaffold0570 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 16334600 - 16334908
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16334600 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat |
16334699 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||| || |||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
16334700 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtc |
16334799 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacatgtgaggaaacaggatgggagttatgggc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| | ||| |||||| || |||| |
|
|
| T |
16334800 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatctcatgtgagatatcagattgggagctacgggc |
16334899 |
T |
|
| Q |
313 |
aagcctttg |
321 |
Q |
| |
|
||||||||| |
|
|
| T |
16334900 |
aagcctttg |
16334908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 16125051 - 16124743
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
16125051 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
16124952 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||| ||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
16124951 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc |
16124852 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacatgtgaggaaacaggatgggagttatgggc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||| |||| |
|
|
| T |
16124851 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatctcatgtgagaaatcagattgggagttacgggc |
16124752 |
T |
|
| Q |
313 |
aagcctttg |
321 |
Q |
| |
|
||||||||| |
|
|
| T |
16124751 |
aagcctttg |
16124743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 16127204 - 16126928
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
16127204 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggtgttaagacatttatagacgacagcgagcttaaaaaaggagatgagat |
16127105 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||| ||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
16127104 |
ctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaagactatgcttcttcaaaatggtgtttgaatgaactcgtc |
16127005 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacatgtgag |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
16127004 |
aagattctagaatgcaagaaagataatggacaaattgtgataccaattttctatgaaatagatccatctcatgtgag |
16126928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 36017537 - 36017229
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||| ||| ||| ||| ||||||| ||||||||| ||||||| |||||||||| ||||| |
|
|
| T |
36017537 |
atactcgtagcaaattcacaagccatcttaatgaagctctgaaaaggagtggcgttaggacatttgtagatgacagcgagcttgaaaaaggagacgagat |
36017438 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtc |
212 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
36017437 |
ctcatcagcactgatcaaagccattgaggagtcagatgcatctatagtcatattctcgaaagactatgcttcttctaaatgatgcttgaatgaactcgtc |
36017338 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacatgtgaggaaacaggatgggagttatgggc |
312 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||| || |
|
|
| T |
36017337 |
aagattctagaatgcaagaaagatcagggacaaattgtgataccgattttctacgaaatagatccatcacatgtgaggaatcaaattgggagttacaagc |
36017238 |
T |
|
| Q |
313 |
aagcctttg |
321 |
Q |
| |
|
||||||||| |
|
|
| T |
36017237 |
aagcctttg |
36017229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 36025632 - 36025356
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| ||| |||| | ||| ||||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
36025632 |
atactcgtagaaacttcacaagccatctttatgaagctctgagcaagaaag---ttataacatttatagatgacaatgagcttgaaaaaggagacgagat |
36025536 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtc |
212 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36025535 |
ctcgtcagcactgatcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtc |
36025436 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacatgtgaggaa |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36025435 |
aagattctagaatgcaagaaagataatggacagattgtgatacctgttttctatgaaatagatccatcacatgtgaggaa |
36025356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 36034447 - 36034135
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||| |||| ||||||| |||||||||| ||||| |
|
|
| T |
36034447 |
atactcgtagcaaattcacaagccatcttaataaagctctgcaaaagagcggcctttggacatttatagacgacagcgagcttgaaaaaggagacgagat |
36034348 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcgtatgcatct----atagtcatattctcaaaagactatgcttcctcaaaatggtgcttgaatgaact |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
36034347 |
ctcatcagcactgatcaaagccattgaggagtcagatgcatctctatatattcatattctcaaaagactatgcttcttcaaaatggtatttgaatgaact |
36034248 |
T |
|
| Q |
209 |
cgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacatgtgaggaaacaggatgggagttat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
36034247 |
cgtcaagattctagaatgcaagaaagatcatgggcagattgtgataccgattttctacgaaatagatccatcacatgtgaggaatcaaattgggagttac |
36034148 |
T |
|
| Q |
309 |
gggcaagcctttg |
321 |
Q |
| |
|
||||||||||| |
|
|
| T |
36034147 |
aagcaagcctttg |
36034135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 36004871 - 36004566
Alignment:
| Q |
13 |
atactcgtagaaaattcacaagccatcttaatgaagctttgaaaaagagcggccttaagacatttatagatgacaacgagcttaaaaaaggagatgagat |
112 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||| ||| |||| ||| ||||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
36004871 |
atactggtagaaagttcacaagccatctttatgaagctctgagcaagaaaa---ttataacatttatagatgacaatgagcttgaaaaaggagacgagat |
36004775 |
T |
|
| Q |
113 |
ctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtc |
212 |
Q |
| |
|
||| ||||||||||||||||| |||||||| |||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36004774 |
ctcgtcagcactgatcaaagctattgaagattcgtctgcatctatcgtcatcttctcaaaagactacgcttcctcaaaatggtgcttgaatgaactcgtc |
36004675 |
T |
|
| Q |
213 |
aagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacatgtgaggaaacaggatgggagttatgggc |
312 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
36004674 |
aagattctagaatgtaagaaagatcagggacagattgtgataccgattttctacgaaatagatccatcacatgtgaggaatcaaaatggaagttatgggc |
36004575 |
T |
|
| Q |
313 |
aagcctttg |
321 |
Q |
| |
|
||||||||| |
|
|
| T |
36004574 |
aagcctttg |
36004566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 321
Target Start/End: Complemental strand, 23406855 - 23406609
Alignment:
| Q |
75 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaag |
174 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||| ||||| |||||| || |
|
|
| T |
23406855 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23406756 |
T |
|
| Q |
175 |
actatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaataga |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||| | |||||||||||||||| |||| || | ||||| |
|
|
| T |
23406755 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacctgttttttacaacataga |
23406656 |
T |
|
| Q |
275 |
tccatcacatgtgaggaaacaggatgggagttatgggcaagcctttg |
321 |
Q |
| |
|
||||||| |||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
23406655 |
tccatcaaatgtgaggaagcagaccgggagttacaagcaagcctttg |
23406609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 321
Target Start/End: Complemental strand, 23465509 - 23465263
Alignment:
| Q |
75 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaag |
174 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||| ||||| |||||| || |
|
|
| T |
23465509 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23465410 |
T |
|
| Q |
175 |
actatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaataga |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||| | ||||||||||||||| |||| || | ||||| |
|
|
| T |
23465409 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgataccagttttttacaacataga |
23465310 |
T |
|
| Q |
275 |
tccatcacatgtgaggaaacaggatgggagttatgggcaagcctttg |
321 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
23465309 |
tccatcacatgtgaggaagcagaccgggagttacaagcaagcctttg |
23465263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 322
Target Start/End: Complemental strand, 23354006 - 23353759
Alignment:
| Q |
75 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaag |
174 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||| ||||| |||||| || |
|
|
| T |
23354006 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23353907 |
T |
|
| Q |
175 |
actatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaataga |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||| ||||||||||||||| |||| || | ||||| |
|
|
| T |
23353906 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgtaacagattgtgataccagttttttacaacataga |
23353807 |
T |
|
| Q |
275 |
tccatcacatgtgaggaaacaggatgggagttatgggcaagcctttga |
322 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
23353806 |
tccatcacatgtgaggaagcagaccgggagttacaagcaagcctttga |
23353759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 72 - 321
Target Start/End: Complemental strand, 23449379 - 23449130
Alignment:
| Q |
72 |
acatttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaa |
171 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||| ||||| |||||| |
|
|
| T |
23449379 |
acatttatagacaacaatgagcttcgaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcag |
23449280 |
T |
|
| Q |
172 |
aagactatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaat |
271 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||| ||||||||||||||| |||| || | || |
|
|
| T |
23449279 |
aaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatgcaacagattgtgataccagttttttacaacat |
23449180 |
T |
|
| Q |
272 |
agatccatcacatgtgaggaaacaggatgggagttatgggcaagcctttg |
321 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
23449179 |
agatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttg |
23449130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 36009838 - 36009671
Alignment:
| Q |
97 |
aaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaaatggtg |
196 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||||||||| ||||| || ||||||||||||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
36009838 |
aaaaaggagatgagatatcatcatcactaatcaaagccattgaggagtcatacacatctatagtcatcttttcaaaagattatgcttcttcaaaatggtg |
36009739 |
T |
|
| Q |
197 |
cttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttct |
264 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||||| |||||| |
|
|
| T |
36009738 |
cttgaatgaactcgtcaaaattctagaatgcaaaaaagatttgggacaaattgtgatacctgttttct |
36009671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 321
Target Start/End: Complemental strand, 23480850 - 23480620
Alignment:
| Q |
91 |
agcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaa |
190 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||| ||||| |||||| || |||||||||| ||||| |
|
|
| T |
23480850 |
agcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgagaagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaa |
23480751 |
T |
|
| Q |
191 |
atggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacatgtgagg |
290 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||||||||||| |||| | ||| ||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
23480750 |
atggtgcttgaatgagctcaagaagattcttgaatgcaagaaatataaggaacacattgtgataccagttttttacaaaatagatccatcacatgtgagg |
23480651 |
T |
|
| Q |
291 |
aaacaggatgggagttatgggcaagcctttg |
321 |
Q |
| |
|
|| ||| |||||||| | |||||| |||| |
|
|
| T |
23480650 |
aaccagaccgggagttacgagcaagcttttg |
23480620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 75 - 321
Target Start/End: Complemental strand, 23501139 - 23500893
Alignment:
| Q |
75 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaag |
174 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||| ||||| |||||| || |
|
|
| T |
23501139 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23501040 |
T |
|
| Q |
175 |
actatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatgga-cagattgtgatacctattttctatgaaatag |
273 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||||||| ||||| |||||| ||| |||| |||||||||||||| |||| || | |||| |
|
|
| T |
23501039 |
actatgcttcgtcaaaatggtgcttgaatgagctcaaaaagattcttgaatgtaagaaatata-tggagcagattgtgataccagttttttacaacatag |
23500941 |
T |
|
| Q |
274 |
atccatcacatgtgaggaaacaggatgggagttatgggcaagcctttg |
321 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
23500940 |
atccatcacatgtgaggaagcagaccgggagttacaagcaagcctttg |
23500893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 75 - 307
Target Start/End: Complemental strand, 23441986 - 23441754
Alignment:
| Q |
75 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaag |
174 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||| |||| || ||||||| |||| ||||||||| ||||| ||| ||||| ||||| |||||| || |
|
|
| T |
23441986 |
tttatagacaacaatgagcttcaaaaaggagataagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaa |
23441887 |
T |
|
| Q |
175 |
actatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaataga |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||| | |||||||||||||||| |||| || | ||||| |
|
|
| T |
23441886 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttttttacaacataga |
23441787 |
T |
|
| Q |
275 |
tccatcacatgtgaggaaacaggatgggagtta |
307 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |
|
|
| T |
23441786 |
tccatcacatgtgaggaagcagactgggagtta |
23441754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 75 - 307
Target Start/End: Complemental strand, 23474518 - 23474286
Alignment:
| Q |
75 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaag |
174 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||| |||| || ||||||| |||| ||||||||| ||||| ||| ||||| ||||| |||||| || |
|
|
| T |
23474518 |
tttatagacaacaatgagcttcaaaaaggagataagatatcgccagcactcatcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaa |
23474419 |
T |
|
| Q |
175 |
actatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaataga |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||| | |||||||||||||||| |||| || | ||||| |
|
|
| T |
23474418 |
actatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatgcaagaaatatatggtacagattgtgatacctgttttttacaacataga |
23474319 |
T |
|
| Q |
275 |
tccatcacatgtgaggaaacaggatgggagtta |
307 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |
|
|
| T |
23474318 |
tccatcacatgtgaggaagcagactgggagtta |
23474286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 75 - 319
Target Start/End: Complemental strand, 23388495 - 23388251
Alignment:
| Q |
75 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaag |
174 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||| | | || || |||| |||||| || |
|
|
| T |
23388495 |
tttatagacaacaatgagcttgaaaaaggagatgagatctcaccagcactcatcaaagccattgaggagtcacacgtgtcaattatcatcttctcagaaa |
23388396 |
T |
|
| Q |
175 |
actatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaataga |
274 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||| |||||||||||||||| |||| || | ||||| |
|
|
| T |
23388395 |
attatgcttcctcaaaatggtgcttgaatgagctcaagaagattcttcaatgcaagaaatatatgcaacagattgtgatacctgttttttacaacataga |
23388296 |
T |
|
| Q |
275 |
tccatcacatgtgaggaaacaggatgggagttatgggcaagcctt |
319 |
Q |
| |
|
||| |||||||||||||| ||| ||||||||| | ||||||||| |
|
|
| T |
23388295 |
tccctcacatgtgaggaagcagactgggagttacgagcaagcctt |
23388251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 91 - 257
Target Start/End: Complemental strand, 21087477 - 21087311
Alignment:
| Q |
91 |
agcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaa |
190 |
Q |
| |
|
||||||||||||||||| ||||| || ||| ||| |||||||||||||||||||| ||||||| || | ||| |||||| || |||| ||||||||||| |
|
|
| T |
21087477 |
agcttaaaaaaggagataagatcacaccagaactcatcaaagccattgaagagtcacatgcatcgattgacatcttctcagaaaactacgcttcctcaaa |
21087378 |
T |
|
| Q |
191 |
atggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacct |
257 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||| |||| | ||| |||||||||||| |
|
|
| T |
21087377 |
atggtgcttgaatgagctcaaaaagattctagaatgcaagaaatataaggaacaaattgtgatacct |
21087311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 23435574 - 23435419
Alignment:
| Q |
75 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaag |
174 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||| ||||| |||||| || |
|
|
| T |
23435574 |
tttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaa |
23435475 |
T |
|
| Q |
175 |
actatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaag |
230 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
23435474 |
actatgcttcttcaaaatggtgcttaaatgagctcaaaaagattctagaatgcaag |
23435419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 292
Target Start/End: Complemental strand, 23456118 - 23455923
Alignment:
| Q |
97 |
aaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaaatggtg |
196 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||| ||||||| ||||| ||| ||||| ||||| |||||| || |||| ||||||||||||||||| |
|
|
| T |
23456118 |
aaaaaggagatgagatctcaccaacactcatcaaaaccattgaggagtcacatgtgtctattgtcatcttctcagaaaactacgcttcctcaaaatggtg |
23456019 |
T |
|
| Q |
197 |
cttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacatgtgaggaa |
292 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| || ||| | |||||| |||||||||||||| || | || |||||||||||||||||||| |
|
|
| T |
23456018 |
tttgaatgatctcaaaaagattctagaatgcaagcaatatatggaacagatcgtgatacctattttttacaacattgatccatcacatgtgaggaa |
23455923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 86 - 284
Target Start/End: Complemental strand, 21088670 - 21088472
Alignment:
| Q |
86 |
caacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcc |
185 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| | ||| |||| ||||| ||||| || |||||| || || || ||| || ||||||||||| |
|
|
| T |
21088670 |
caacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcacgtgtatctattgttatcttttcagaaaactatgcttcc |
21088571 |
T |
|
| Q |
186 |
tcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacat |
284 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||||||||| || | |||||||||||||||| |||| || |||||||||||| |||| |
|
|
| T |
21088570 |
tcaaaatggtgcttgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgtgatacctgttttttacaaaatagatccattacat |
21088472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 121 - 289
Target Start/End: Original strand, 35766233 - 35766401
Alignment:
| Q |
121 |
cactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtcaagattct |
220 |
Q |
| |
|
|||| |||| ||||||||||||||| ||| ||| | |||||||| ||| || |||||||||| || || ||||| ||| ||||| | || ||||| | |
|
|
| T |
35766233 |
cactcatcacagccattgaagagtcacatgtttctgttgtcatattttcagaaaactatgcttcatccaagtggtgtttggatgaaattgtgaagatcat |
35766332 |
T |
|
| Q |
221 |
agaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacatgtgag |
289 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
35766333 |
ggaatgtaagaaagatcggggacaaattgtgatacctgtgttctataaaatagatccatcacatgtgag |
35766401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 75 - 292
Target Start/End: Original strand, 12894620 - 12894837
Alignment:
| Q |
75 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaag |
174 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| || |||||| |||||||||||||||| ||||| ||||||||||| ||||| ||||||| || |
|
|
| T |
12894620 |
tttatagatgacaatgagcttcaaaaaggagatgagatatcctcagcattgatcaaagccattgaggagtcatatgcatctattgtcatcttctcaatag |
12894719 |
T |
|
| Q |
175 |
actatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaataga |
274 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| || |||||||| |
|
|
| T |
12894720 |
actatgcttcctcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaagatcatggacaaattgtgatacctgttttttacgaaataga |
12894819 |
T |
|
| Q |
275 |
tccatcacatgtgaggaa |
292 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12894820 |
tccatcacatgtgaggaa |
12894837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 321
Target Start/End: Complemental strand, 13673 - 13437
Alignment:
| Q |
85 |
acaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttc |
184 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||| ||||| |||||| || |||||||||| |
|
|
| T |
13673 |
acaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttc |
13574 |
T |
|
| Q |
185 |
ctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacat |
284 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||| |||||||||||| ||| | |||||||||||||||| |||| || | ||||||||| || || |
|
|
| T |
13573 |
ctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagaaatatatggaacagattgtgatacctgttttttacaacatagatccagcaaat |
13474 |
T |
|
| Q |
285 |
gtgaggaaacaggatgggagttatgggcaagcctttg |
321 |
Q |
| |
|
|||||||| ||| ||| ||||| ||||||||||| |
|
|
| T |
13473 |
gtgaggaagcagactggaagttaccagcaagcctttg |
13437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 85 - 322
Target Start/End: Original strand, 9667 - 9904
Alignment:
| Q |
85 |
acaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttc |
184 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||| || || |||||| || |||||||||| |
|
|
| T |
9667 |
acaatgagcttcaaaaaggagatgagatctcggcagcactcatcaaagccattgaggagtcacatgcatctattgtaatcttctcagaaaactatgcttc |
9766 |
T |
|
| Q |
185 |
ctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttctatgaaatagatccatcacat |
284 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||| ||||||||| || ||| | |||||| ||||||||| |||| || | |||||||| || || |
|
|
| T |
9767 |
ctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaagcaatatatggaacagatggtgatacctgttttttacaacttagatccagcaaat |
9866 |
T |
|
| Q |
285 |
gtgaggaaacaggatgggagttatgggcaagcctttga |
322 |
Q |
| |
|
||||| || ||| ||| ||||| | |||||||||||| |
|
|
| T |
9867 |
gtgagaaagcagactggaagttacgagcaagcctttga |
9904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 165 - 290
Target Start/End: Original strand, 3312 - 3437
Alignment:
| Q |
165 |
ttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttct |
264 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||||||| ||| |||||| |||||||| ||||| ||| | ||||||||| || || |||| | |
|
|
| T |
3312 |
ttctcataaaactatgcttcctcaaaatgatgcttgaatgagctcaaaaagattatagaatgctagaaatatatggaacagattgtaatgtctgtttttt |
3411 |
T |
|
| Q |
265 |
atgaaatagatccatcacatgtgagg |
290 |
Q |
| |
|
| || ||||||||||| ||||||||| |
|
|
| T |
3412 |
acgacatagatccatcgcatgtgagg |
3437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 167562 - 167677
Alignment:
| Q |
90 |
gagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcgtatgcatctatagtcatattctcaaaagactatgcttcctcaa |
189 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||| |||||||||||||| |||| |||||||||| ||||| |||||| || |||||||||||||| |
|
|
| T |
167562 |
gagcttcaaaaaggagatgagatctcgccaacactcatcaaagccattgaggagtaacatgcatctattgtcatcttctcagaaaactatgcttcctcat |
167661 |
T |
|
| Q |
190 |
aatggtgcttgaatga |
205 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
167662 |
aatggtgcttgaatga |
167677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 6188677 - 6188556
Alignment:
| Q |
165 |
ttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgcaagaaagataatggacagattgtgatacctattttct |
264 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||| ||||||||||| | || || |||||| ||| ||||||||| | || |||||| | |||| |
|
|
| T |
6188677 |
ttctcaaaagactatgcaacttcaaagtggtgcttggatgaactcgtccacatacttcaatgcagaaaacttaatggacatgtagttatacctgtgttct |
6188578 |
T |
|
| Q |
265 |
atgaaatagatccatcacatgt |
286 |
Q |
| |
|
|| | ||||||||||||||||| |
|
|
| T |
6188577 |
ataacatagatccatcacatgt |
6188556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 6097933 - 6097884
Alignment:
| Q |
165 |
ttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtcaa |
214 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||| |||||||| |||| |
|
|
| T |
6097933 |
ttctcagaaaactatgcttcctcaaaatggtgtttggatgaactcctcaa |
6097884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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