View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1273_low_23 (Length: 346)
Name: NF1273_low_23
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 35182744 - 35182441
Alignment:
| Q |
14 |
gaacctgtgagtgtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcga |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35182744 |
gaacttgtgagtgtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcga |
35182645 |
T |
|
| Q |
114 |
gtgctgctggagcctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcggg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35182644 |
gtgctgctggagcctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcggg |
35182545 |
T |
|
| Q |
214 |
aagaggacgaaggctaagataccagattgttcctcgctcccgcactactgggatattaactcgacttcgatctcctgtagaagcaccagtcgaaccgaca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35182544 |
aagaggacgaaggctaagataccagattgttcctcgctcccgcactactgggatattaactcgacttcgatctcctgtagaagcaccagtcgaaccgaca |
35182445 |
T |
|
| Q |
314 |
gaaa |
317 |
Q |
| |
|
|||| |
|
|
| T |
35182444 |
gaaa |
35182441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 35178763 - 35178506
Alignment:
| Q |
26 |
gtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcgagtgctgctggag |
125 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35178763 |
gtgtgttggttcgaaatccggggctggatcaacacgatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcgagtgcttctggaa |
35178664 |
T |
|
| Q |
126 |
cctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcgggaagaggacgaag |
225 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
35178663 |
cctatggatttgagtatcagccatgtgaagcctccattgtcattgctggaggtgatactgtggagcgaaatgtattcttggatgtggaaagaggacgaag |
35178564 |
T |
|
| Q |
226 |
gctaagataccagattgttcctcgctcccgcactactgggatattaactcgacttcga |
283 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
35178563 |
gctaagataccagattgttcatcgcttccgtactactgggatattcactcgacttcga |
35178506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University