View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_3 (Length: 555)
Name: NF1273_low_3
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 36 - 548
Target Start/End: Complemental strand, 52851124 - 52850613
Alignment:
| Q |
36 |
aaccgacctgagtttgaattgctgaaatgtcccctttttcccccctcaagctagctctattaaagggtagacattgtgtccttccaactaagggatttta |
135 |
Q |
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| T |
52851124 |
aaccgacctgaatttaaattgctgaaatgtcccctttttccccc-tcaagctagctctattaaagggtagacattgtgtccttccaactaagggatttta |
52851026 |
T |
|
| Q |
136 |
tgctcttacgtcggcttaagaagccaaatccaaaagttttctttgaggtctcggccgtgttaataaaaccaaccaactttgcaacaagcgcagcactttc |
235 |
Q |
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| T |
52851025 |
tgctcttacgtcggcttaagaagccaaatccaaaagttttctttgaggtctcacccgtgttaataaaaccaaccaactttgcaacaagcgcagcactttc |
52850926 |
T |
|
| Q |
236 |
tcttatgtggttcaaatctcttgtatccgtccatatgagccatgccaattgtatacttctgtgttttgtcttcaaatcaataccccacttcaggtatagt |
335 |
Q |
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| T |
52850925 |
tcttatgtggttcaaatctcttgtatccgtccatatgagccatgccaattgtatacttctgtgttttgtcttcaaatcaataccccacttcaggtatagt |
52850826 |
T |
|
| Q |
336 |
tcctctcttcccttcctcgaaaacttcttatgcacttgcttactgagcattttcctctcacgggttagagacagcaggctgttcagtaattgtggcatga |
435 |
Q |
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| T |
52850825 |
tcctctcttcccttcctcgaaaacttcttatgcacttgcttactgagcattttcctctcacgggttagagacagcaggctgttcagtaattgtggcatga |
52850726 |
T |
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| Q |
436 |
aaatagtgtgaaaacttgatatatgacataaaaatagcatataattgtgactttatgcaagtgtttgatgtaaagtattcaaagtgaaacaccagccatt |
535 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52850725 |
aaatagtgtgaaaacttgatatatgacataaaaatagcatataattgtgactttatgcaagtgtttgatgtaaagcattcaaagtgaaacaccagccatt |
52850626 |
T |
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| Q |
536 |
atgtttcatctca |
548 |
Q |
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| T |
52850625 |
atgtttcatctca |
52850613 |
T |
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