View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1273_low_32 (Length: 321)

Name: NF1273_low_32
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1273_low_32
NF1273_low_32
[»] chr5 (8 HSPs)
chr5 (97-169)||(34389164-34389236)
chr5 (199-234)||(34389262-34389297)
chr5 (125-154)||(11779820-11779849)
chr5 (128-157)||(16155178-16155207)
chr5 (128-157)||(31501675-31501704)
chr5 (117-157)||(16333833-16333873)
chr5 (128-156)||(19986256-19986284)
chr5 (122-154)||(26876067-26876099)
[»] chr1 (1 HSPs)
chr1 (126-157)||(34883387-34883418)
[»] chr8 (3 HSPs)
chr8 (128-157)||(15317588-15317617)
chr8 (128-157)||(15497957-15497986)
chr8 (128-157)||(33947255-33947284)
[»] chr3 (1 HSPs)
chr3 (128-157)||(38282591-38282620)
[»] chr2 (2 HSPs)
chr2 (128-157)||(2043343-2043372)
chr2 (129-157)||(4555149-4555177)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 34389164 - 34389236
Alignment:
Q  97 aaatctcatataaaaaatatttattttttaaggttaattgttcaaattgaccatgtaatattagcgctgtcag 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34389164 aaatctcatataaaaaatatttattttttaaggttaattgttcaaattgaccatgtaatattagcgctgtcag 34389236  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 34389262 - 34389297
Alignment:
Q  199 ctcattataactctttaatttaagattatttatatt 234  Q
    |||||||||||||| |||||||||||||||||||||    
T  34389262 ctcattataactctgtaatttaagattatttatatt 34389297  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 11779849 - 11779820
Alignment:
Q  125 taaggttaattgttcaaattgaccatgtaa 154  Q
    ||||||||||||||||||||||||||||||    
T  11779849 taaggttaattgttcaaattgaccatgtaa 11779820  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 16155178 - 16155207
Alignment:
Q  128 ggttaattgttcaaattgaccatgtaatat 157  Q
    ||||||||||||||||||||||||||||||    
T  16155178 ggttaattgttcaaattgaccatgtaatat 16155207  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 31501704 - 31501675
Alignment:
Q  128 ggttaattgttcaaattgaccatgtaatat 157  Q
    ||||||||||||||||||||||||||||||    
T  31501704 ggttaattgttcaaattgaccatgtaatat 31501675  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 16333873 - 16333833
Alignment:
Q  117 ttattttttaaggttaattgttcaaattgaccatgtaatat 157  Q
    ||||||| || ||||||||||||||||||||| ||||||||    
T  16333873 ttattttatagggttaattgttcaaattgaccctgtaatat 16333833  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 156
Target Start/End: Original strand, 19986256 - 19986284
Alignment:
Q  128 ggttaattgttcaaattgaccatgtaata 156  Q
    |||||||||||||||||||||||||||||    
T  19986256 ggttaattgttcaaattgaccatgtaata 19986284  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 26876099 - 26876067
Alignment:
Q  122 ttttaaggttaattgttcaaattgaccatgtaa 154  Q
    |||||||||||||||||| ||||||||||||||    
T  26876099 ttttaaggttaattgttccaattgaccatgtaa 26876067  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 157
Target Start/End: Original strand, 34883387 - 34883418
Alignment:
Q  126 aaggttaattgttcaaattgaccatgtaatat 157  Q
    ||||||||||||||||||||||||||||||||    
T  34883387 aaggttaattgttcaaattgaccatgtaatat 34883418  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 15317617 - 15317588
Alignment:
Q  128 ggttaattgttcaaattgaccatgtaatat 157  Q
    ||||||||||||||||||||||||||||||    
T  15317617 ggttaattgttcaaattgaccatgtaatat 15317588  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 15497986 - 15497957
Alignment:
Q  128 ggttaattgttcaaattgaccatgtaatat 157  Q
    ||||||||||||||||||||||||||||||    
T  15497986 ggttaattgttcaaattgaccatgtaatat 15497957  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 33947255 - 33947284
Alignment:
Q  128 ggttaattgttcaaattgaccatgtaatat 157  Q
    ||||||||||||||||||||||||||||||    
T  33947255 ggttaattgttcaaattgaccatgtaatat 33947284  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 38282591 - 38282620
Alignment:
Q  128 ggttaattgttcaaattgaccatgtaatat 157  Q
    ||||||||||||||||||||||||||||||    
T  38282591 ggttaattgttcaaattgaccatgtaatat 38282620  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 2043372 - 2043343
Alignment:
Q  128 ggttaattgttcaaattgaccatgtaatat 157  Q
    ||||||||||||||||||||||||||||||    
T  2043372 ggttaattgttcaaattgaccatgtaatat 2043343  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 157
Target Start/End: Complemental strand, 4555177 - 4555149
Alignment:
Q  129 gttaattgttcaaattgaccatgtaatat 157  Q
    |||||||||||||||||||||||||||||    
T  4555177 gttaattgttcaaattgaccatgtaatat 4555149  T

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