View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1273_low_34 (Length: 317)

Name: NF1273_low_34
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1273_low_34
NF1273_low_34
[»] chr1 (2 HSPs)
chr1 (34-304)||(5129891-5130161)
chr1 (160-216)||(26324397-26324453)
[»] chr5 (12 HSPs)
chr5 (75-151)||(8640656-8640732)
chr5 (75-130)||(9002546-9002601)
chr5 (75-126)||(8534701-8534752)
chr5 (75-144)||(8548797-8548866)
chr5 (83-138)||(8677535-8677590)
chr5 (75-113)||(1601078-1601116)
chr5 (83-144)||(8528118-8528179)
chr5 (83-119)||(9002294-9002330)
chr5 (83-138)||(8636311-8636366)
chr5 (76-119)||(8640461-8640504)
chr5 (83-113)||(9075170-9075200)
chr5 (160-216)||(8528038-8528094)
[»] chr7 (2 HSPs)
chr7 (75-144)||(48362540-48362609)
chr7 (78-130)||(35777535-35777587)
[»] chr6 (1 HSPs)
chr6 (78-114)||(16715635-16715671)
[»] chr4 (1 HSPs)
chr4 (160-216)||(9442205-9442261)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 34 - 304
Target Start/End: Complemental strand, 5130161 - 5129891
Alignment:
Q  34 ttgcaattttagctagtattacataaatattgtttttatttatttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcc 133  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130161 ttgcagttttagctagtattacataaatattgtttttatttatttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcc 5130062  T
Q  134 caacagattgtggaaagtacacattcttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaagactgaagaattcaacgaa 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130061 caacagattgtggaaagtacacattcttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaagactgaagaattcaacgaa 5129962  T
Q  234 gagcccacttcttaagaatagtactgtatgtgtgttttctcattgattggtattctgactcctgcttagta 304  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  5129961 gagcccacttcttaagaatagtattgtatgtgtattttctcattgattggtattctgactcctgcttagta 5129891  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 26324397 - 26324453
Alignment:
Q  160 ttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaaga 216  Q
    |||||||||||||  |||| | ||||||||||||||||||  ||||||||| |||||    
T  26324397 ttcatcatcttatggtgacttgataaatatatcttcctccttatctgatggtgaaga 26324453  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 8640732 - 8640656
Alignment:
Q  75 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgtggaaagt 151  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| |||| ||||||| |||||    
T  8640732 atttatataggtgtgcaaagtttaaattgggagaagaaaatgaagttttttccttgtctcaacggattgtgcaaagt 8640656  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 9002601 - 9002546
Alignment:
Q  75 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttg 130  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  9002601 atttatataggtgtgcaaagtttaaattgagggaagaaagtgaagttttttccttg 9002546  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 8534752 - 8534701
Alignment:
Q  75 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttc 126  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  8534752 atttatataggtgtgcaaagtttaaattgcgggaagaaaaggaagttctttc 8534701  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 8548797 - 8548866
Alignment:
Q  75 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgt 144  Q
    ||||||| ||||||| |||||||||||| | ||||||||| |||||| |||| ||||| |||||||||||    
T  8548797 atttatataggtgtgtaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgt 8548866  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 8677590 - 8677535
Alignment:
Q  83 aggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaaca 138  Q
    |||||||||||  || ||||||||||||||||||||||| |||||||||| |||||    
T  8677590 aggtgtgcaaatgttgaattgcgggaagaaaatgaagttctttccttgtcacaaca 8677535  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 1601078 - 1601116
Alignment:
Q  75 atttatacaggtgtgcaaagtttaaattgcgggaagaaa 113  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  1601078 atttatataggtgtgcaaagtttaaattgcgggaagaaa 1601116  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 8528179 - 8528118
Alignment:
Q  83 aggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgt 144  Q
    ||||||||||||||||||||||||| |||||| || ||| ||||  |||| |||||||||||    
T  8528179 aggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgt 8528118  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 9002330 - 9002294
Alignment:
Q  83 aggtgtgcaaagtttaaattgcgggaagaaaatgaag 119  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9002330 aggtgtgcaaagtttaaattgcgtgaagaaaatgaag 9002294  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 8636366 - 8636311
Alignment:
Q  83 aggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaaca 138  Q
    |||||||||||  || |||||| |||||||||||||||| |||||||||| |||||    
T  8636366 aggtgtgcaaatgttgaattgccggaagaaaatgaagttctttccttgtctcaaca 8636311  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 8640504 - 8640461
Alignment:
Q  76 tttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaag 119  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||    
T  8640504 tttatataggtgtgcaaaatttaaattgcgtgaagaaaatgaag 8640461  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 9075170 - 9075200
Alignment:
Q  83 aggtgtgcaaagtttaaattgcgggaagaaa 113  Q
    |||||||||||||||||||||||||||||||    
T  9075170 aggtgtgcaaagtttaaattgcgggaagaaa 9075200  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 8528094 - 8528038
Alignment:
Q  160 ttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaaga 216  Q
    |||||||||||||  |||| | ||||||||||||||||||  ||||||||| |||||    
T  8528094 ttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaaga 8528038  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 48362540 - 48362609
Alignment:
Q  75 atttatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttgtcccaacagattgt 144  Q
    ||||||| |||||||||||||||||||||| ||||||||| |||| | | ||  |||| |||||||||||    
T  48362540 atttatataggtgtgcaaagtttaaattgcaggaagaaaaggaaggtatatctctgtctcaacagattgt 48362609  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 35777587 - 35777535
Alignment:
Q  78 tatacaggtgtgcaaagtttaaattgcgggaagaaaatgaagttttttccttg 130  Q
    |||| ||||||||||||| ||||||| ||||||||| ||||||| ||| ||||    
T  35777587 tatataggtgtgcaaagtataaattgtgggaagaaagtgaagttcttttcttg 35777535  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 16715671 - 16715635
Alignment:
Q  78 tatacaggtgtgcaaagtttaaattgcgggaagaaaa 114  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  16715671 tatataggtgtggaaagtttaaattgcgggaagaaaa 16715635  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 9442261 - 9442205
Alignment:
Q  160 ttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaaga 216  Q
    |||||||||||||  |||| | ||||||||||||||||||  ||||||||| |||||    
T  9442261 ttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaaga 9442205  T

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