View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_37 (Length: 310)
Name: NF1273_low_37
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 26721688 - 26721408
Alignment:
| Q |
1 |
attttttctacttcgtttcatcacaataatgctataatgatgggtgcaattaaatttatctaaaaaagattaacaaaaagtgataatacattaatacttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26721688 |
attttttctacttcgtttcatcacaataatgctataatgatgggtgcaattaaatttatctaaaaaagattaacaaaaattgataatacattaatacttt |
26721589 |
T |
|
| Q |
101 |
atggaatcaaatttgaatatgttcacccaaaaattgctaaaaattcatattacattattaatataatgatacagaaaattattatctcatcataatagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721588 |
atggaatcaaatttgaatatgttcacccaaaaattgctaaaaattcatattacattattaatataatgatacagaaaattattatctcatcataatagtg |
26721489 |
T |
|
| Q |
201 |
tcgatttcgaaattgaaaactgaaaacgctgaaaacaaaaatcaatgactgaacttttaacctttcaattcatattgtaat |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26721488 |
tcgatttcgaaattgaaaactgaaaacgctgaaaacaaaaatcaattactgaacttttaacctttcaattcatattgtaat |
26721408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 2 - 259
Target Start/End: Original strand, 45117223 - 45117482
Alignment:
| Q |
2 |
ttttttctacttcgtttcatcacaataatgctataatgatgggtgcaattaaatttatctaaaaaagattaacaaaaagtgataatacattaatacttta |
101 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45117223 |
ttttttctacctcgtttcatcacaataatgctataatgatgggtgcaattaaatttatctaaaaaagattaacaaaaagtgataatacattaatacttta |
45117322 |
T |
|
| Q |
102 |
tggaatcaaatttgaatatgttcacccaaaaattgctaaaaattcatattacattattaatataatgatacagaaaattattatctcatcataatagtgt |
201 |
Q |
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| T |
45117323 |
tggaatcaaatttgaatatcttcacccaaaaattgctaaaaactcatattacattattaatataatgatacagaaaattattatctcaccataatagtgt |
45117422 |
T |
|
| Q |
202 |
cgatttcgaaattgaaaactgaaaacgctg--aaaacaaaaatcaatgactgaactttta |
259 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| |||||||||| |||||||||||| |
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|
| T |
45117423 |
cgatttggaaattgaaaactgaaaacgctgaaaaaaaaaaaatcaattactgaactttta |
45117482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 45117504 - 45117535
Alignment:
| Q |
248 |
actgaacttttaacctttcaattcatattgta |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
45117504 |
actgaacttttaacctttcaattcatattgta |
45117535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 2987154 - 2986991
Alignment:
| Q |
2 |
ttttttctacttcgtttcatcacaataatgctataatgatgggtgcaattaaatttatctaaaaaagattaacaaaaagtgataatacattaatacttta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2987154 |
ttttttctacttcgtttcatcacaataatgctataatgatgggtgcaattaaatttatctaaaaaagattaacaaaaagtgataatacattaatacttta |
2987055 |
T |
|
| Q |
102 |
tggaatcaaatttgaatatgttcacccaaaaattgctaaaaattcatattacattattaatata |
165 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2987054 |
tggaatcaaatttgaatatcttcacccaaaaattgctaaaaactcatattacattattaatata |
2986991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 157 - 259
Target Start/End: Complemental strand, 2986685 - 2986583
Alignment:
| Q |
157 |
attaatataatgatacagaaaattattatctcatcataatagtgtcgatttcgaaattgaaaactgaaaacgctgaaaacaaaaatcaatgactgaactt |
256 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
2986685 |
attaatataatgatacagaaaattattatctcaccataatagtgtcgatttggaaattgaaaactgaaaacgcttaaaacaaaaatcaattactgaactt |
2986586 |
T |
|
| Q |
257 |
tta |
259 |
Q |
| |
|
||| |
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|
| T |
2986585 |
tta |
2986583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 2986560 - 2986529
Alignment:
| Q |
248 |
actgaacttttaacctttcaattcatattgta |
279 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
2986560 |
actgaacttttaacctttcaattcatattgta |
2986529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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