View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_4 (Length: 530)
Name: NF1273_low_4
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 10971172 - 10970732
Alignment:
| Q |
1 |
tcgtgataaattttgcttaatgattccttggtatattactattcgataaaaaatctctattacttcatagttcattgtacataactattattagagacat |
100 |
Q |
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| T |
10971172 |
tcgtgataaattttgcttaatgattcgttgatatattactattcgataaaaa-tctctattacttcatagttcattgtacataactattattagagacat |
10971074 |
T |
|
| Q |
101 |
gctgcttctactttatttcaagagaggaattggatttcaaatttaaggagcaatgagcagaatgaaccggtgaagttgaaatcttggaaaagcaaaaatg |
200 |
Q |
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| T |
10971073 |
gctgcttctactttatttcaagagaggaattggatttcaaatttaaggagcaatgagcagaatgaaccggtgaagttgaaatcttggaaaagcaaaaatg |
10970974 |
T |
|
| Q |
201 |
tggaaccaatgcgatgatatgttgaggattttctttctacataccttccacttggacacaaaatttctttctacatatcttctttgactttaagaattgt |
300 |
Q |
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| T |
10970973 |
tggaaccaatgcgatgatatgttgaggattttctttctacatatctaccacttggacacaaaatttctttctacatatcttctttgactttaagaattgt |
10970874 |
T |
|
| Q |
301 |
gtgtaaataaagacaataatggtgagactcacggaacaacaatcaatgacaagtgtagccctgctcttaatgttgtaaaataggcaaagtgaagggaaaa |
400 |
Q |
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| T |
10970873 |
gtgtaaataaagacaataatggtgagactcacggaacaacaatcaatgacaagtgtagccctgcccttaatgttgtaaaataggcaaagtgaagggaaaa |
10970774 |
T |
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| Q |
401 |
tgatggnnnnnnnnncttactctactaatagagtgagtcatcag |
444 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
10970773 |
tgatgg--aaaaaaacttactctactaatagagtgagtcatcag |
10970732 |
T |
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