View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1273_low_44 (Length: 286)

Name: NF1273_low_44
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1273_low_44
NF1273_low_44
[»] chr5 (10 HSPs)
chr5 (71-242)||(37533642-37533814)
chr5 (71-242)||(37400258-37400430)
chr5 (71-242)||(37640414-37640586)
chr5 (71-242)||(37712166-37712338)
chr5 (71-242)||(37824437-37824609)
chr5 (72-242)||(37436249-37436420)
chr5 (71-242)||(37697329-37697501)
chr5 (71-242)||(37703210-37703382)
chr5 (71-242)||(37594866-37595038)
chr5 (71-141)||(37392404-37392474)
[»] chr4 (1 HSPs)
chr4 (71-242)||(16842322-16842494)
[»] chr3 (1 HSPs)
chr3 (165-227)||(14553668-14553730)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 37533814 - 37533642
Alignment:
Q  71 ggtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttagtggtctaatcccaaatatttatcgaaatt 170  Q
    |||||||||||||||||||||||||||||   ||||||||||||| |||  |||||||  ||||||||||||| |   ||||||||| ||||| ||||||    
T  37533814 ggtgagatctcaccattactttcaaacctcaaacacctcattcattgtgatcttggattgaataactttagtgctagcatcccaaatgtttatggaaatt 37533715  T
Q  171 taatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat-gtcactttttcatct 242  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37533714 taatcaaattggaatatttatcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37533642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 37400258 - 37400430
Alignment:
Q  71 ggtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttagtggtctaatcccaaatatttatcgaaatt 170  Q
    |||||||||||||||||||||||||||||   ||||||||||||| |||  ||||||| ||||||||||||| ||   ||||||| | ||||| ||||||    
T  37400258 ggtgagatctcaccattactttcaaacctcaaacacctcattcattgtgatcttggatttaataactttagtagtagcatcccaattgtttatggaaatt 37400357  T
Q  171 taatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat-gtcactttttcatct 242  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37400358 taatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37400430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 37640586 - 37640414
Alignment:
Q  71 ggtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttagtggtctaatcccaaatatttatcgaaatt 170  Q
    |||||||||||||||||||||||||||||   ||||||||||||| |||  ||||||| |||||||||||| |||   ||||||| | ||||| ||||||    
T  37640586 ggtgagatctcaccattactttcaaacctcaaacacctcattcattgtgatcttggatttaataactttagcggtagcatcccaattgtttatggaaatt 37640487  T
Q  171 taatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat-gtcactttttcatct 242  Q
    |||||||||||||||||||||  |||| || ||||||||||||||||||||||||||  ||||||||||||||    
T  37640486 taatcaaattggaatatttatcactttactttaacaacctaacaggccaagttccatcatcactttttcatct 37640414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 37712338 - 37712166
Alignment:
Q  71 ggtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttagtggtctaatcccaaatatttatcgaaatt 170  Q
    |||||||||||||||||||||||||||||   ||||||||||||| ||   |||| ||||||||||||||| |||   ||||||||| ||||| ||||||    
T  37712338 ggtgagatctcaccattactttcaaacctcaaacacctcattcattgttatcttgcatataataactttagcggtagcatcccaaatgtttatggaaatt 37712239  T
Q  171 taatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat-gtcactttttcatct 242  Q
    ||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37712238 taatcaaattgaaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37712166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 37824609 - 37824437
Alignment:
Q  71 ggtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttagtggtctaatcccaaatatttatcgaaatt 170  Q
    |||||||||||||||||||||||||||||   ||||||||||||| |||  |||| | | ||||||||||| |||   ||||||||| ||||| ||||||    
T  37824609 ggtgagatctcaccattactttcaaacctcaaacacctcattcattgtgatcttgcagagaataactttagcggtagcatcccaaatgtttatggaaatt 37824510  T
Q  171 taatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat-gtcactttttcatct 242  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37824509 taatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37824437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 72 - 242
Target Start/End: Complemental strand, 37436420 - 37436249
Alignment:
Q  72 gtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttagtggtctaatcccaaatatttatcgaaattt 171  Q
    ||||||| |||||||||||||||||||   ||||||||||| || ||| ||||||||||||||||||||| |||   || |||||| |||||| ||||||    
T  37436420 gtgagatttcaccattactttcaaacccctcacacctcatttattgtgaccttggatataataactttagcggtagcattccaaatgtttatcaaaattt 37436321  T
Q  172 aatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat-gtcactttttcatct 242  Q
    || |||||||||||||||||  |||||||| |||| ||||||||||||||||||||  ||||||||||||||    
T  37436320 aaccaaattggaatatttatcactttcctccaacagcctaacaggccaagttccatcatcactttttcatct 37436249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 37697501 - 37697329
Alignment:
Q  71 ggtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttagtggtctaatcccaaatatttatcgaaatt 170  Q
    |||||||||||||||||||||||||||||   |||||||||| || ||   |||| | ||||||||||||| |||   ||||||| | ||||| ||||||    
T  37697501 ggtgagatctcaccattactttcaaacctcaaacacctcattgattgtaatcttgcaaataataactttagcggtagcatcccaattgtttatggaaatt 37697402  T
Q  171 taatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat-gtcactttttcatct 242  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37697401 taatcaaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatct 37697329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 37703382 - 37703210
Alignment:
Q  71 ggtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttagtggtctaatcccaaatatttatcgaaatt 170  Q
    |||||||||||||||||||||||||||||   ||||||||||||| ||   |||| ||||||||||||||| ||    ||||||| | ||||| ||||||    
T  37703382 ggtgagatctcaccattactttcaaacctcaaacacctcattcattgtaatcttgcatataataactttagcggaggcatcccaattgtttatggaaatt 37703283  T
Q  171 taatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat-gtcactttttcatct 242  Q
    ||| |||||||||||||||||  |||||||||||||| |||||||||||||||||||  ||||||||||||||    
T  37703282 taaacaaattggaatatttatcactttcctctaacaagctaacaggccaagttccatcatcactttttcatct 37703210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 37595038 - 37594866
Alignment:
Q  71 ggtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttagtggtctaatcccaaatatttatcgaaatt 170  Q
    |||||||||||||||||||||||||||||   |||||||||||||  ||  |||  | ||||||||||||| |||   ||||||| | ||||| ||||||    
T  37595038 ggtgagatctcaccattactttcaaacctcaaacacctcattcattatgatcttacagataataactttagcggtagcatcccaattgtttatggaaatt 37594939  T
Q  171 taatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat-gtcactttttcatct 242  Q
    ||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  37594938 taatcaaattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatct 37594866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 37392404 - 37392474
Alignment:
Q  71 ggtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttag 141  Q
    |||||||||||||||||| |||  |||||   ||||||||||||| |||  |||||||||||| |||||||    
T  37392404 ggtgagatctcaccattatttttgaacctcaaacacctcattcattgtgatcttggatataattactttag 37392474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 16842322 - 16842494
Alignment:
Q  71 ggtgagatctcaccattactttcaaaccttgcacacctcattcatagtggccttggatataataactttagtggtctaatcccaaatatttatcgaaatt 170  Q
    |||||||||||||||||||||||||||||   ||||||||||||| |||  |||| || |||||||||||| |||   ||||||| | ||||| ||||||    
T  16842322 ggtgagatctcaccattactttcaaacctcaaacacctcattcattgtgatcttgtatttaataactttagcggtagcatcccaattgtttatggaaatt 16842421  T
Q  171 taatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat-gtcactttttcatct 242  Q
    ||| |||||| |||||| |||  |||||||||||||  |||||||||||||||||||  ||||||||||||||    
T  16842422 taagcaaattagaatatctatcactttcctctaacagtctaacaggccaagttccatcatcactttttcatct 16842494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 14553730 - 14553668
Alignment:
Q  165 gaaatttaatcaaattggaatatttatacctttcctctaacaacctaacaggccaagttccat 227  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  14553730 gaaatttaatcaaattggaatatttataccttttctctaacaacctagcaggccaagttccat 14553668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University