View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1273_low_45 (Length: 284)
Name: NF1273_low_45
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_45 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 17392604 - 17392709
Alignment:
| Q |
104 |
ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagt--taaact----agcttgcgaagctgatcttcaattcgcaaca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
17392604 |
ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagcttgcgaagctgattttcgattcgcaaca |
17392703 |
T |
|
| Q |
198 |
tatatt |
203 |
Q |
| |
|
|||||| |
|
|
| T |
17392704 |
tatatt |
17392709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 17377526 - 17377646
Alignment:
| Q |
104 |
ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttaaa--ct----agcttgcgaagctgatcttcaattcgcaaca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | || |||||||||||||||| ||| |||||||||| |
|
|
| T |
17377526 |
ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaactttaaagttataggctctgaagcttgcgaagctgattttcgattcgcaaca |
17377625 |
T |
|
| Q |
198 |
tatattattcgacatgcgaga |
218 |
Q |
| |
|
|||||| | ||| |||||||| |
|
|
| T |
17377626 |
tatattttgcgaaatgcgaga |
17377646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 17383894 - 17383999
Alignment:
| Q |
104 |
ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagtta--aact----agcttgcgaagctgatcttcaattcgcaaca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||| ||| |||||||||| |
|
|
| T |
17383894 |
ggaatatccagatcatgttccagaatgtgtttcgtctaatctaacaaaatttgaagttatgcactatgaagcttgggaagctgattttcgattcgcaaca |
17383993 |
T |
|
| Q |
198 |
tatatt |
203 |
Q |
| |
|
|||||| |
|
|
| T |
17383994 |
tatatt |
17383999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 17380109 - 17380154
Alignment:
| Q |
104 |
ggaatatccagatcatgttccagaatgtgtttcgtctcatctaaca |
149 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
17380109 |
ggaatatccatatcatgttctagattgtgtttcatctcatctaaca |
17380154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 26052859 - 26052801
Alignment:
| Q |
104 |
ggaatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagtta |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26052859 |
ggaatatccagatcatgttccagaatgtgtttcatctcatctaacaaaatttgaagtta |
26052801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 40809 - 40846
Alignment:
| Q |
113 |
agatcatgttccagaatgtgtttcgtctcatctaacaa |
150 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
40809 |
agatcatgttcctgaatgtgtttcgtctcatcttacaa |
40846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University