View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_47 (Length: 279)
Name: NF1273_low_47
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 8859853 - 8860038
Alignment:
| Q |
38 |
aagaatatgtgtttcattatttctcatatcttaagagaatgcaatcgttgtgcaaacaagattgcttaccttggactctgaaataagaactttgtgtgat |
137 |
Q |
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| T |
8859853 |
aagaatatgtgtttcattatttctcatatcttaagagaatgcaatcgttgtgcaaacaagattgcttatcttagactctgaaataagaactttgtgtggt |
8859952 |
T |
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| Q |
138 |
gggattctatatatcattcttgaatttcagatttatttaaccaaaatatgttataacttccttattatcgtttctactagtgtttt |
223 |
Q |
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| T |
8859953 |
gggattctatatatcattcttgaatttcagatttatttaaccaaaatatattataacttccttattatcgtttcttcaagtgtttt |
8860038 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 43548132 - 43548209
Alignment:
| Q |
38 |
aagaatatgtgtttcattatttctcatatcttaagagaatgcaatcgttgtgcaaacaagattgcttaccttggactc |
115 |
Q |
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| T |
43548132 |
aagaatatgttattcattatttctcatatcttcagagaagacaatcgttgtgccgacaacattgcttccgttggactc |
43548209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 43550127 - 43550050
Alignment:
| Q |
38 |
aagaatatgtgtttcattatttctcatatcttaagagaatgcaatcgttgtgcaaacaagattgcttaccttggactc |
115 |
Q |
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| T |
43550127 |
aagaatatgttattcattatttctcatatcttcagagaagacaatcgttgtgccgacaacattgcttccgttggactc |
43550050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 25836552 - 25836481
Alignment:
| Q |
38 |
aagaatatgtgtttcattatttctcatatcttaagagaatgcaatcgttgtgcaaacaagattgcttacctt |
109 |
Q |
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| T |
25836552 |
aagaatatgcgtttcactattttgcacatcttcagagaaggaaatcgttgtgcagacaagattgcttccctt |
25836481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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