View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_48 (Length: 278)
Name: NF1273_low_48
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 37162544 - 37162687
Alignment:
| Q |
9 |
gaagaatatacaccgtcagaagaaaacagttttacactaatatccaatcaaaatccactattttgcaacattactccactcttgtatgcccagtcagaag |
108 |
Q |
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| T |
37162544 |
gaagaatatacaccgtcagaagaaaacagttttacactaatatccaatcaaaatccactattttgcaacattactccactcttgtatgggcagtcagaag |
37162643 |
T |
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| Q |
109 |
ttaataatgccatataaaaatacagcattgctttacatcgcgag |
152 |
Q |
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| T |
37162644 |
ttaataatgccatataaaaatacagcattgctatacatcgcgag |
37162687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 37162695 - 37162730
Alignment:
| Q |
146 |
tcgcgagtgttatcccgacagcaaaaagcctttgat |
181 |
Q |
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| T |
37162695 |
tcgcgagtgttatcccgacagcaaaaagcctttgat |
37162730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 596422 - 596529
Alignment:
| Q |
10 |
aagaatatacaccgtcagaagaaaacagttttacactaatatccaatcaaaatccactattttgcaacattactccactcttgtatgcccagtcagaagt |
109 |
Q |
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| T |
596422 |
aagaatatccaccgtcaattaaaaccagttttacactaacattcaatcaaaatcaactattttgccacataaccccactcttgtatgggtagttacaagt |
596521 |
T |
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| Q |
110 |
taataatg |
117 |
Q |
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| T |
596522 |
taataatg |
596529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 49250327 - 49250276
Alignment:
| Q |
37 |
gttttacactaatatccaatcaaaatccactattttgcaacattactccact |
88 |
Q |
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| T |
49250327 |
gttttacattaacatccaatgaaaatccactattttgcaacatcaccccact |
49250276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 17511349 - 17511398
Alignment:
| Q |
30 |
gaaaacagttttacactaatatccaatcaaaatccactattttgcaacat |
79 |
Q |
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| T |
17511349 |
gaaaacagttttacactgacatccaatgaaaatccactactttgccacat |
17511398 |
T |
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