View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_5 (Length: 521)
Name: NF1273_low_5
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 169 - 382
Target Start/End: Complemental strand, 23177506 - 23177296
Alignment:
| Q |
169 |
tccatctatgatcacaatattaccatcaggatgaatggtaagtaacgccgaggatgtttgaaatgcgtaatctctgttggcaacccaaataatcttgtcc |
268 |
Q |
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| T |
23177506 |
tccatctatgattacaatattaccatcatggtcaatggtaagaaacaccgaggatgtttgaaatgcgttgtctctgttggcaacccaaacaatcttgtca |
23177407 |
T |
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| Q |
269 |
tttggtacctttttaaaccatatacccacatagtacttggtggagttctctctgttgtttctggtgaaaaatcccagttcatagtttccaccgtatgaaa |
368 |
Q |
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| T |
23177406 |
tttgctacctttttgaaccatatacctacatagtacttggtcgagttctctctgat---tcgagtgaaaaatcccagttcgtagttcccaccctttgaaa |
23177310 |
T |
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| Q |
369 |
caaccgtgtctgaa |
382 |
Q |
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||| ||||||||| |
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| T |
23177309 |
caagtgtgtctgaa |
23177296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 169 - 382
Target Start/End: Complemental strand, 23186644 - 23186431
Alignment:
| Q |
169 |
tccatctatgatcacaatattaccatcaggatgaatggtaagtaacgccgaggatgtttgaaatgcgtaatctctgttggcaacccaaataatcttgtcc |
268 |
Q |
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|||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| ||||||||| |
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| T |
23186644 |
tccatctatgatgacaatgttaccatcatcgtgaatggtaagaaacgccgaggatgtttgaggttcgtaatctctgttggcaacccaaacaatcttgtca |
23186545 |
T |
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| Q |
269 |
tttggtacctttttaaaccatatacccac---atagtacttggtggagttctctctgttgtttctggtgaaaaatcccagttcatagtttccaccgtatg |
365 |
Q |
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| T |
23186544 |
tttgctacctttttgaaccatatacctacgtagtagtacttgatcgagttctctc---tatttctagtgaaaaatccaagttcgtagttcccaccctttg |
23186448 |
T |
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| Q |
366 |
aaacaaccgtgtctgaa |
382 |
Q |
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|||||| ||||||||| |
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| T |
23186447 |
aaacaagtgtgtctgaa |
23186431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 21182387 - 21182426
Alignment:
| Q |
116 |
gcataggtattatagttgttgtttggaacgttggtcacga |
155 |
Q |
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| T |
21182387 |
gcataggtattatagttgttgtttggaacgttggtcacga |
21182426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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