View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_6 (Length: 498)
Name: NF1273_low_6
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 26913875 - 26914217
Alignment:
| Q |
16 |
atgccaaagatcaagccaatggagaagaaagtacttttgcttttaatgccgtatacttgcctattgatttctggtacactgccaaataacttcaatcact |
115 |
Q |
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| T |
26913875 |
atgccaaagatcaagccaatggtgaagaaagtacttttgcttttaatgccgtatacttgcctattgatttttggtacactgccaaataacttcaatcact |
26913974 |
T |
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| Q |
116 |
agaatttgcgtgtaaaatgtggatttgtt--------gctaattttgacattgtttaattaatttgtagcactgagttaaacaaaggctatgcctttgtt |
207 |
Q |
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| T |
26913975 |
agaatttgtgtgtaaaatgtggatttgttcatacactgctaattgtgacattgtttaattaatttgcagtactgagttaaacaaaggctatgcctttgtt |
26914074 |
T |
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| Q |
208 |
aatttcaccaagcatgaggcagcttggaaatttcaactgacagcctctgggaagaactgggaacacttcaattccagtaagatatgtgatgtggttgctg |
307 |
Q |
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| T |
26914075 |
aatttcaccaagcatgaggcagcttggaaatttcaactgacagcctctgggaagaactgggaacacttcaattccagtaagatatgtgatgtggttgctg |
26914174 |
T |
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| Q |
308 |
cacgcctccaggtatggtttgcatactagacctaatcattata |
350 |
Q |
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| T |
26914175 |
cacgcctccaggtatggtttgcatactagacctaatcattata |
26914217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 3804077 - 3803846
Alignment:
| Q |
23 |
agatcaagccaatggagaagaaagtacttttgcttttaatgccgtatacttgcctattgatttctggtacactgccaaa-taacttcaatcactagaatt |
121 |
Q |
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| T |
3804077 |
agatcaatccaatggtgaagaaagtacttttgctttcgatttcctttatttacctattgatttcaagtacactgccaaaataacttcaatcactggaatt |
3803978 |
T |
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| Q |
122 |
--------tgcgtgtaaaatgtggatttgt--------tgctaattttgacattgtttaattaatttgtagcactgagttaaacaaaggctatgcctttg |
205 |
Q |
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| T |
3803977 |
tttttttgtgtgtgtgaattgttgatgtgttcatacactgctaattgtgacattgtttaattaatttgcagaactgagttaaacaatggctatgcctttg |
3803878 |
T |
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| Q |
206 |
ttaatttcaccaagcatgaggcagcttggaaat |
238 |
Q |
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| T |
3803877 |
tgaa-ttcactaagcattaggcagcttggaaat |
3803846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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