View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1273_low_68 (Length: 221)

Name: NF1273_low_68
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1273_low_68
NF1273_low_68
[»] chr5 (2 HSPs)
chr5 (1-97)||(6314221-6314317)
chr5 (26-97)||(6329429-6329500)
[»] chr4 (1 HSPs)
chr4 (5-93)||(56537905-56537993)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 6314317 - 6314221
Alignment:
Q  1 atttaacttaccaagacccagaaactccatccacaagcccattgattctatcacctgtgatgcaaccaactctcatgacttcatcagcaacattcat 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6314317 atttaacttaccaagacccagaaactccatccacaagcccattgattctatcacctgtgatgcaaccaactctcataacttcatcagcaacattcat 6314221  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 6329500 - 6329429
Alignment:
Q  26 tccatccacaagcccattgattctatcacctgtgatgcaaccaactctcatgacttcatcagcaacattcat 97  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| ||||| | ||| ||||||||||||||    
T  6329500 tccatccacaagcccattgattctatcacctatcatgcaaccaacactcataaattcttcagcaacattcat 6329429  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 56537993 - 56537905
Alignment:
Q  5 aacttaccaagacccagaaactccatccacaagcccattgattctatcacctgtgatgcaaccaactctcatgacttcatcagcaacat 93  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||  || ||||| ||||||||||    
T  56537993 aacttaccaagacccagaaactccgtccacaagccctttgattctatcacctgtgatgcaaccaactccaataacttcttcagcaacat 56537905  T

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