View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_7 (Length: 459)
Name: NF1273_low_7
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Original strand, 42837279 - 42837700
Alignment:
| Q |
30 |
atttaaacatggcaacaaattcgataacaactgatactaacaccacacctactttgaacctatcagaaaggtacctacctgtcggtatctatcagaagct |
129 |
Q |
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| T |
42837279 |
atttaaacatggcaacaaattcgataacaactgatactaacaccacacctactttgaacctatcagaaaggtacctacctgtcggtatctatcagaagct |
42837378 |
T |
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| Q |
130 |
ctttggtggagcttgaaatcataaacaggaacctgaactgactgtccagatttaagtttgatgagtgtttctacaagttgttctgtatcaaatgcatcta |
229 |
Q |
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| T |
42837379 |
ctttggtggagcttgaaatcataaacaggaacctgaactgactgtccagatttaagtttgatgagtgtttctacaagttgttctgtatcaaatgcatcta |
42837478 |
T |
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| Q |
230 |
acaaaaaccaaaagatttaatttaatccagatcacacataactgccatttttcgcgcatagtaaatcttaattaccataccaggatgatcaaaattatac |
329 |
Q |
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| T |
42837479 |
acaaaaaccaaaagatttaatttaatccagatcacacataactgccatttttcgcgcatagtaaatcttaattaccataccaggatgatcaaaattatac |
42837578 |
T |
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| Q |
330 |
tcatgaacacgtttcgactcatcattcgttaaaccgcggtagaaagaatcctacaacaagagtaaataaattagtgatcaatgtgaattgatttgtatta |
429 |
Q |
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| T |
42837579 |
tcatgaacacgtttcgactcatcattcgttaaaccgcggtagaaagaatcctacaacaagagtaaataaattagtgatcaatgtgaattgatttgtatta |
42837678 |
T |
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| Q |
430 |
acttgatgatttctcctatgat |
451 |
Q |
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| T |
42837679 |
acttgatgatttctcctatgat |
42837700 |
T |
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