View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1273_low_76 (Length: 209)

Name: NF1273_low_76
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1273_low_76
NF1273_low_76
[»] chr8 (8 HSPs)
chr8 (75-209)||(44547311-44547445)
chr8 (133-209)||(44547447-44547523)
chr8 (133-209)||(44547525-44547601)
chr8 (133-193)||(44547969-44548029)
chr8 (169-208)||(44547969-44548008)
chr8 (169-207)||(44547849-44547887)
chr8 (133-194)||(44548167-44548228)
chr8 (133-185)||(44547687-44547739)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 75 - 209
Target Start/End: Original strand, 44547311 - 44547445
Alignment:
Q  75 ataatactgtaacagatttcggtgaagctacaatgcaagtggaggttggtcctcaggttcaagagctagaaagggtggtagctggtcctcaagatcaaga 174  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44547311 ataatactataacagatttcggtgaagctacaatgcaagtggagattggtcctcaggttcaagagctagaaagggtggtagctggtcctcaagatcaaga 44547410  T
Q  175 gctaggaaggggggtggctggtcctcaggctcaac 209  Q
    ||||||||||| |||||||||||||||||||||||    
T  44547411 gctaggaagggtggtggctggtcctcaggctcaac 44547445  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 44547447 - 44547523
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaaggggggtggctggtcctcaggctcaac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  || ||||||||||||||    
T  44547447 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtgattgctcctcaggctcaac 44547523  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 44547525 - 44547601
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaaggggggtggctggtcctcaggctcaac 209  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||||||||  ||| |||| ||| |||| |||||    
T  44547525 tcaagagctaggaagggtggtagctggtcctcatgctcaagagctaggaaggatggttgctgctccacaggatcaac 44547601  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 44547969 - 44548029
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaaggggggtggct 193  Q
    |||| |||||| ||||||||| ||||||||||| | ||||||| ||||||||| |||||||    
T  44547969 tcaaaagctaggaagggtggtggctggtcctcaggctcaagagataggaagggtggtggct 44548029  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 44547969 - 44548008
Alignment:
Q  169 tcaagagctaggaaggggggtggctggtcctcaggctcaa 208  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  44547969 tcaaaagctaggaagggtggtggctggtcctcaggctcaa 44548008  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 44547849 - 44547887
Alignment:
Q  169 tcaagagctaggaaggggggtggctggtcctcaggctca 207  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  44547849 tcaagagctaggaagggtggtggctggtcctcaagctca 44547887  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 44548167 - 44548228
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaaggggggtggctg 194  Q
    |||| |||||| |||||| || ||||||||||| | ||||||||||||||||  ||||||||    
T  44548167 tcaaaagctaggaagggtagtggctggtcctcaggctcaagagctaggaaggatggtggctg 44548228  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 44547687 - 44547739
Alignment:
Q  133 tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaaggg 185  Q
    ||||||||||| || |||||| |||||||||||   |||||||||||||||||    
T  44547687 tcaagagctaggaatggtggtggctggtcctcagactcaagagctaggaaggg 44547739  T

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