View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273_low_78 (Length: 202)
Name: NF1273_low_78
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 428887 - 429061
Alignment:
| Q |
19 |
ctttgaaccattatccttttcctttgtttctaatctttgaaccgtgtggtggaaagcctaatccaccaaattaggcgccaaaactgaattacacatatat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
428887 |
ctttgaaccattatccttttcctttgtttctaatctttgaaccgtgtggtggaaagcctaatccaccaaattaggcgccaaaactgaattacacatatat |
428986 |
T |
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| Q |
119 |
aatagaagaaaaggcttgtcaacaaaggccacaaagagagagaagaaaatgttcaaagtttcaaaatattcttcg |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
428987 |
aatagaagaaaaggcttgtcaacaaaggccacaaagagagagaagaaaatgttcaaagtttcagaatatttttcg |
429061 |
T |
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Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 30640630 - 30640456
Alignment:
| Q |
19 |
ctttgaaccattatccttttcctttgtttctaatctttgaaccgtgtggtggaaagcctaatccaccaaattaggcgccaaaactgaattacacatatat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30640630 |
ctttgaaccattatccttttcctttgtttctaatctttgaaccgtgtggtggaaagcctaatccaccaaattaggcgccaaaactgaattacacatatat |
30640531 |
T |
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| Q |
119 |
aatagaagaaaaggcttgtcaacaaaggccacaaagagagagaagaaaatgttcaaagtttcaaaatattcttcg |
193 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||| |
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| T |
30640530 |
aatagaataaaaggtttgtcaacaaaggccacaaagagagagaagaaaatgttcgaagtttcagaatatttttcg |
30640456 |
T |
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