View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1274-Insertion-2 (Length: 686)
Name: NF1274-Insertion-2
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274-Insertion-2 |
 | |
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| [»] chr5 (6 HSPs) |
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| [»] scaffold1079 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 363 - 686
Target Start/End: Original strand, 2692694 - 2693021
Alignment:
| Q |
363 |
ctatcgcttgttcaaacagccatgtgaatggtcaggttgataaacgtcgtactggaatgctcccgtttgttttttatgatacttttgggtatgtttatct |
462 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692694 |
ctattgcttgttcaaacagccatgtgaatggtcaggttgataaacgccgtactggaatgctcccgtttgttttttatgatacttttgggtatgtttatct |
2692793 |
T |
|
| Q |
463 |
ttacttttctaagttttaaataaaattcaaacacaaaaagtgtggtttgatttggtgtgtgattttgcaacaggtttgagcagtttgttgattatgctct |
562 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2692794 |
ttacttttctaagttttaaataaaattcaaacacaaaaagtgtggtttgatttggtgtgtgattttgcaacaggtttgagcagtttgttgattatgctct |
2692893 |
T |
|
| Q |
563 |
tgatgtaccaatgatatttgtgtatcgaaaaaataaatatattccatgtggtggcatgtcattccgggttattatcttttatttcttaaactatct---- |
658 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692894 |
tgatgtaccaatgatatttgtgtatcgaaaaaataaatatattccatgtggtggcatgtcattccgggttattatcttttatttcttaaactatctatcc |
2692993 |
T |
|
| Q |
659 |
atccattacgtgttattttttcctttaa |
686 |
Q |
| |
|
||||||||| |||| ||||||||||||| |
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|
| T |
2692994 |
atccattacatgttgttttttcctttaa |
2693021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 2692545 - 2692625
Alignment:
| Q |
214 |
cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggtgtata |
294 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
2692545 |
cagttagcaacagctttattttcaaattcacctttcaagcaaggagctccaaacggttatgtcagctttagaaggtgtata |
2692625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 508 - 654
Target Start/End: Original strand, 2684504 - 2684647
Alignment:
| Q |
508 |
tttgatttggtgtgtgattttgcaacaggtttgagcagtttgttgattatgctcttgatgtaccaatgatatttgtgtatcgaaaaaataaatatattcc |
607 |
Q |
| |
|
||||||||| |||||| || | | ||||||||||||| ||| |||| ||||||||||||||||| ||| ||||| | ||||||||||||| ||||||| | |
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| T |
2684504 |
tttgatttgttgtgtgcttctcctacaggtttgagcaatttattgactatgctcttgatgtaccgatggtatttatttatcgaaaaaatagatatattgc |
2684603 |
T |
|
| Q |
608 |
atgtggtggcatgtcattccgggttattatcttttatttcttaaact |
654 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||||||| |
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|
| T |
2684604 |
ttgtggtggcatgtcattccggg---taatcttctatttcttaaact |
2684647 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 40230907 - 40231035
Alignment:
| Q |
89 |
tattcgtattgagactggaactcatagggaagaaaatagatttatgaatggaataaaatatgcaata-tttacagacaaaagtattcggttattggg-aa |
186 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||||||||| ||| | ||| ||||||| || |||| ||||||||||||| |||||||||| || |
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|
| T |
40230907 |
tattcttattgagactagaactcatcgggaagaaaatagatttgtgagttcaatgaaatatgtggtattttatagacaaaagtatttggttattgggaaa |
40231006 |
T |
|
| Q |
187 |
aaaatcaatatacttttaatgtcgaatca |
215 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |
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|
| T |
40231007 |
aaaatcaatacacttttaacgtcgaatca |
40231035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 2678954 - 2679029
Alignment:
| Q |
214 |
cagttagcaacagccttattttcaaattcacctttcatgcaaggagctccaaatggttatgtcagctttagaaggt |
289 |
Q |
| |
|
|||||| |||| || |||||| | ||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
2678954 |
cagttatcaactgcattatttgcgaattcacctttcaagcaaggagttccaaatggttatgtcagcttaagaaggt |
2679029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 474
Target Start/End: Original strand, 2679169 - 2679228
Alignment:
| Q |
415 |
tggaatgctcccgtttgttttttatgatacttttgggtatgtttatctttacttttctaa |
474 |
Q |
| |
|
|||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2679169 |
tggaatgctcccatttgcttttcatgatacttttgggtatgtttacatttacttttctaa |
2679228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 16899687 - 16899505
Alignment:
| Q |
34 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16899687 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat |
16899588 |
T |
|
| Q |
134 |
gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899587 |
gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
16899505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 18348202 - 18348020
Alignment:
| Q |
34 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18348202 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat |
18348103 |
T |
|
| Q |
134 |
gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18348102 |
gaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
18348020 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 7e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 34 - 216
Target Start/End: Original strand, 13236289 - 13236471
Alignment:
| Q |
34 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
13236289 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttat |
13236388 |
T |
|
| Q |
134 |
gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236389 |
gaatggaataaaaaatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
13236471 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 6352268 - 6352442
Alignment:
| Q |
38 |
aattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttatgaat |
137 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
6352268 |
aattggtgtggtagattcaaattttaatatatgaatagtaaataaaactagtattcgtattgagactagaactcatagggaagaaaatagatttatgaat |
6352367 |
T |
|
| Q |
138 |
ggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaat |
213 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6352368 |
ggaataaaatatgtaatatttacagacaaaagtattc-attattgggaaaaaatcaatatacttttaatgtcgaat |
6352442 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 10404203 - 10404067
Alignment:
| Q |
77 |
aaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcgg |
176 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
10404203 |
aaataaaactagtattggtattgagactagaaatcatagggaagaaaatagatttatgaatggaataaaatatataatatttacaaacaaaagtattcgg |
10404104 |
T |
|
| Q |
177 |
ttattgggaaaaaatcaatatacttttaatgtcgaat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10404103 |
ttattgggaaaaaatcaatatacttttaatgtcgaat |
10404067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 691 - 512
Alignment:
| Q |
34 |
aacgaattggtgtggtaaattcaaatttaaatatatgaacagtaaataaaactagtattcgtattgagactggaactcatagggaagaaaatagatttat |
133 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
691 |
aacgaattggtgtggtatattcatatcataacatatgaacagtaag---aactagcattcttattgagactcgaactcatagggaagaaaatagatttat |
595 |
T |
|
| Q |
134 |
gaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatcag |
216 |
Q |
| |
|
| ||||||| |||||| | || ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |
|
|
| T |
594 |
ggatggaatcaaatatatagtagttacagacaaaagtattcggttagtggtgaaaaatcaatatacttctaatgtcgaatcag |
512 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 42203278 - 42203382
Alignment:
| Q |
111 |
catagggaagaaaatagatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcg |
210 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
42203278 |
catatggaaaaaaatagatttatgaatggaataatatatgcaatatttacagacaaaagtgttcggttatt-gtaaaaattcaatatacttttaatgtcg |
42203376 |
T |
|
| Q |
211 |
aatcag |
216 |
Q |
| |
|
|||||| |
|
|
| T |
42203377 |
aatcag |
42203382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 197865 - 197952
Alignment:
| Q |
127 |
gatttatgaatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc |
214 |
Q |
| |
|
|||||||| ||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
197865 |
gatttatggatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc |
197952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 256308 - 256387
Alignment:
| Q |
135 |
aatggaataaaatatgcaatatttacagacaaaagtattcggttattgggaaaaaatcaatatacttttaatgtcgaatc |
214 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
256308 |
aatggaatcaaatacgcagtatttacagaaaaaagtcttcgtttattgggaaagaatcaatatacttttaatgtcgaatc |
256387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 604
Target Start/End: Complemental strand, 40924850 - 40924779
Alignment:
| Q |
533 |
caggtttgagcagtttgttgattatgctcttgatgtaccaatgatatttgtgtatcgaaaaaataaatatat |
604 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| |||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
40924850 |
caggtttgagcagtacgttgattttgctcttgatgttccaatgtattttgtctatcggaaaaagaaatatat |
40924779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 10412143 - 10412115
Alignment:
| Q |
8 |
gttgaaatagattcggaaacggaagaaac |
36 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10412143 |
gttgaaatagattcggaaacggaagaaac |
10412115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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