View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274-Insertion-5 (Length: 735)
Name: NF1274-Insertion-5
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 8 - 735
Target Start/End: Complemental strand, 36953206 - 36952479
Alignment:
| Q |
8 |
ggaaaatgcacaagctacaaacctacaactgatcaagtagtgatgttactaaagaaaattacataaataaaataaaattacatctcttaattgtttaaat |
107 |
Q |
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| T |
36953206 |
ggaaaatgcacaagctacaaacctacaactgatcaagtagtgaagttactaaagaaaattacataaataaaataaaattacatctcttaattgtttaaat |
36953107 |
T |
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| Q |
108 |
acttctagcaagcatttcttgatacttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatca |
207 |
Q |
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| T |
36953106 |
gcttctagcaagcatttcttgatacttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatca |
36953007 |
T |
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| Q |
208 |
atattctcattaacaatctctttctcttttgtaccctcttgaatcttcttctcctcaagccactgtaaatatcctgcaagatgtgagtcaggacaatcct |
307 |
Q |
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| T |
36953006 |
atattctcattaacaatctctttctcttttgtaccctcttgaatcttcttctcctcaagccactgtaaatatcctgcaagatgtgagtcaggacaatcct |
36952907 |
T |
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| Q |
308 |
cactttttggctgctctgaagtatcaaacaaaccttcataaacccgttccggaaccggtaaaacatgagaagattttgaagaacaccaattataatgaag |
407 |
Q |
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| T |
36952906 |
cactttttggctgctctgaagtatcaaacaaaccttcataaacccgttccggaaccggcaaaacatgagaagattttgaagaacaccaattataatgaag |
36952807 |
T |
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| Q |
408 |
tctaaaggaacctaaaatgatcttttttcttatgttgttacgttttttgtgagaggaagggtaataagtgaagttgatggttgagttgttgtcgtctttg |
507 |
Q |
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| T |
36952806 |
tctaaaggaacctaaaatgatcttttttcttatgttgttacgttttttgtgagaggaagggtaataagtgaagttgatggttgagttgttgtcgtctttg |
36952707 |
T |
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| Q |
508 |
agaatctcaactataaaatctttgactttggatagtgcacgaattattctacacaagtgtgaaactaagagggtgtggataattcttttgagtttgattg |
607 |
Q |
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| T |
36952706 |
agaatctcaactataaaatctttgactttggatagtgcacgaattattctacacaagtgtgaaactaagagggtgtggataattcttttgagtttgattg |
36952607 |
T |
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| Q |
608 |
aggttaaatttgaannnnnnnnnnnnnnnnnntttagtgagaaaatttgaagagatggagtgaacatttttgtgtgattaaaggagcaggtggtggatag |
707 |
Q |
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| T |
36952606 |
aggttaaatttgaagatgatgatgatgatgattttagtgagaaaatttgaagagatggagtgaacatttttgtgtgattaaaggagcaggtggtggatag |
36952507 |
T |
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| Q |
708 |
aaatattatgagagagtgagtgtatgta |
735 |
Q |
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| T |
36952506 |
aaatattatgagagagtgggtgtatgta |
36952479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 22870048 - 22870136
Alignment:
| Q |
120 |
catttcttgatacttcctatcagattcttgtttttccaacttgaacttctcatgacaattagcaataaacatttcagctaacatatcaa |
208 |
Q |
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| T |
22870048 |
catttcctgataccttctataagattcctccttttcaaccttaaacttctcatgacaatttgcaatgaacatttctgccaacatatcaa |
22870136 |
T |
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