View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1274-Insertion-6 (Length: 790)
Name: NF1274-Insertion-6
Description: NF1274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1274-Insertion-6 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0245 (2 HSPs) |
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| [»] scaffold0229 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 696; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 28 - 790
Target Start/End: Complemental strand, 1302001 - 1301237
Alignment:
| Q |
28 |
gcatgcctgcatattgtgcagtcttctaatagtattataagcttgaatgaaggattttgtaagacttgtggaaattacaaaggtgtgcagtcttctaata |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1302001 |
gcatgcctgcatattgtgcagtcttctaatagtattataagcttgaatgaaagattttgtaagacttgtggaaattacaaaggtgtgcagtcttctaata |
1301902 |
T |
|
| Q |
128 |
gtattataagcttgaatgaaggattttgtaagacttgtggaaattacaaaggtcatctaggtacaaattacatgagatgcatgtatgtagtcttcttact |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1301901 |
gtattataagcttgaatgaaggattttgtaagacttgtggaaattacaaaggtcatctaggtacaaattacatgagatgcatgtatgtagtcttcttact |
1301802 |
T |
|
| Q |
228 |
tgatagaaagggaaatatgaatgttaagacttcaaaatatggcaatgcagtcttgtgaataatacttgatagtaaactcaaaattgtttcaatttacaaa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1301801 |
tgatagaaagggaaatatgaatgttaagacttcaaaatatggcaatgcagtcttgtgaataatacttgatagtaaactcaaaattgtttcaatttacaaa |
1301702 |
T |
|
| Q |
328 |
ccaagtttagctattattttatttcataaactgttacttaaccatattctgtcttctgggccatctgctaatcgtattatgatgtcatttagtaagggga |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1301701 |
ccaagtttagctattattttatttcataaactgttacttaaccatattctgtcttctgggccatctgctaatcgtattatgatgtcatttagtaagggga |
1301602 |
T |
|
| Q |
428 |
gcgcaannnnnnnnccacagggggaatcaacatttttgtccaaaattctctgttcttgatcttgattgttgaaaccaaattggtggaattatatccaatg |
527 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1301601 |
gcgcaattttttttccacagggggaatcaacatttttgtccaaaattctctgttcttgatcttgattgttgaaaccaaattggtggaattatatccaatg |
1301502 |
T |
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| Q |
528 |
gctatgttgaataatgtggctannnnnnnaattttgcacaaagttctctctcccctttttgaatgtggcttttgagtttgtttggtgtgcatgcatttgt |
627 |
Q |
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| T |
1301501 |
gctatgttgaataatgtggctatttttttaattttgcacaaagttctctctcccctttttgaatgtggcttttgagtttgtttggtgtgcatgcatttgt |
1301402 |
T |
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| Q |
628 |
gcaactgctggtctggttggcccattttttgttttccaaggatcatgggttaaaaagctaattgtgcaagtctgacaaattattatatcttccaat-aaa |
726 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1301401 |
gcaactgctggtctggttggcccgttttttgttttccaaggatcatgggttaaaaagctaattgtgcaagtctgacaaattattatatcttccaataaaa |
1301302 |
T |
|
| Q |
727 |
agaaagaaatcatagaatttgtgttgtttcaggtaaagga-ttggagtctaccacccttgaagac |
790 |
Q |
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| T |
1301301 |
agaaagaaatcatagaatttgtgttgtttcaggtaaaggatttggagtctaccacccttgaagac |
1301237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 1280845 - 1280734
Alignment:
| Q |
138 |
cttgaatgaaggattttgtaagacttgtggaaattacaaaggtcatctaggtacaaattacatgagatgcatgtatgtagtcttcttacttgatagaaag |
237 |
Q |
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||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||| || |||||| |||| ||||||||||| ||| || |||| |
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| T |
1280845 |
cttgaatgaaggattttgtaataattgtggatattacaaaggtcatctaggtacaagttacttgcgatgcaagtatctagtcttcttatttggtaaaaag |
1280746 |
T |
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| Q |
238 |
ggaaatatgaat |
249 |
Q |
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|||||||||||| |
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| T |
1280745 |
ggaaatatgaat |
1280734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 1280845 - 1280803
Alignment:
| Q |
69 |
cttgaatgaaggattttgtaagacttgtggaaattacaaaggt |
111 |
Q |
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||||||||||||||||||||| | ||||||| ||||||||||| |
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| T |
1280845 |
cttgaatgaaggattttgtaataattgtggatattacaaaggt |
1280803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 6523 - 6412
Alignment:
| Q |
138 |
cttgaatgaaggattttgtaagacttgtggaaattacaaaggtcatctaggtacaaattacatgagatgcatgtatgtagtcttcttacttgatagaaag |
237 |
Q |
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||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||| || |||||| |||| ||||||||||| ||| || |||| |
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| T |
6523 |
cttgaatgaaggattttgtaataattgtggatattacaaaggtcatctaggtacaagttacttgcgatgcaagtatctagtcttcttatttggtaaaaag |
6424 |
T |
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| Q |
238 |
ggaaatatgaat |
249 |
Q |
| |
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|||||||||||| |
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| T |
6423 |
ggaaatatgaat |
6412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 6523 - 6481
Alignment:
| Q |
69 |
cttgaatgaaggattttgtaagacttgtggaaattacaaaggt |
111 |
Q |
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||||||||||||||||||||| | ||||||| ||||||||||| |
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| T |
6523 |
cttgaatgaaggattttgtaataattgtggatattacaaaggt |
6481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 6853 - 6742
Alignment:
| Q |
138 |
cttgaatgaaggattttgtaagacttgtggaaattacaaaggtcatctaggtacaaattacatgagatgcatgtatgtagtcttcttacttgatagaaag |
237 |
Q |
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||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |||| || |||||| |||| ||||||||||| ||| || |||| |
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| T |
6853 |
cttgaatgaaggattttgtaataattgtggatattacaaaggtcatctaggtacaagttacttgcgatgcaagtatctagtcttcttatttggtaaaaag |
6754 |
T |
|
| Q |
238 |
ggaaatatgaat |
249 |
Q |
| |
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|||||||||||| |
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| T |
6753 |
ggaaatatgaat |
6742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 6853 - 6811
Alignment:
| Q |
69 |
cttgaatgaaggattttgtaagacttgtggaaattacaaaggt |
111 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||||||||||| |
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| T |
6853 |
cttgaatgaaggattttgtaataattgtggatattacaaaggt |
6811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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