View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_high_11 (Length: 443)
Name: NF12740_high_11
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 822065 - 821808
Alignment:
| Q |
5 |
gaggagcagagagcgcatgaattttaaaatgctttttgtttggttccacaagataacttaaaagggagctaaaattagcttaggagggttttggcccttg |
104 |
Q |
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| T |
822065 |
gaggagaagagagcgcatgaattttaaaatgctttttgtttggttccccaagataacttaaaagggagctaaaattagcttaggagggttttggcccttg |
821966 |
T |
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| Q |
105 |
gccctcctccctnnnnnnnntaaataaacaaatcaaacctaaaacttatgataaccgctcccatcccttgccgtcaatttccctccaaccaaacagaccc |
204 |
Q |
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| T |
821965 |
gccctcctccctaaaaaaaaaaaataaacaaatcaaacctaaaacttatgataaccgctcccatcccttgccgtcaatttccctccaaccaaacagaccc |
821866 |
T |
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| Q |
205 |
taaaggattgttcaaatttattgcattccttgggaaatagatcaataacctaaaggac |
262 |
Q |
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| T |
821865 |
taaaggattgttcaaatttattgcattccttgggaaatagatcaataacctaaaggac |
821808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 318 - 428
Target Start/End: Complemental strand, 821752 - 821642
Alignment:
| Q |
318 |
gaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaaatatttcttaatttgtgcaccgagacaaagtttaggacgactttcataa |
417 |
Q |
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| T |
821752 |
gaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaaatatttcttaatttgtgcaccgagacaaagtttaggacgactttcataa |
821653 |
T |
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| Q |
418 |
cagcacatatt |
428 |
Q |
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| T |
821652 |
cagcacatatt |
821642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 45807946 - 45808020
Alignment:
| Q |
187 |
ctccaaccaaacagaccctaaaggattgttcaaatttattgcattccttgggaaatagatcaataacctaaagga |
261 |
Q |
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| T |
45807946 |
ctccaaccatacataccctaaagaattgtttaattttattgcattccttggggaattgatcagtaatctaaagga |
45808020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 1539702 - 1539753
Alignment:
| Q |
195 |
aaacagaccctaaaggattgttcaaatttattgcattccttgggaaatagatc |
247 |
Q |
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| T |
1539702 |
aaacagaccctaaagaattgttcaaa-ttattgctttctttgggaaatagatc |
1539753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 17769750 - 17769801
Alignment:
| Q |
195 |
aaacagaccctaaaggattgttcaaatttattgcattccttgggaaatagatc |
247 |
Q |
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| T |
17769750 |
aaacagaccctaaagaattgttcaaa-ttattgctttctttgggaaatagatc |
17769801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 10114501 - 10114548
Alignment:
| Q |
190 |
caaccaaacagaccctaaaggattgttcaaatttattgcattccttgg |
237 |
Q |
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| T |
10114501 |
caaccaaacaaactctaaaggaacgttcaaatttattgcattccttgg |
10114548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 10114631 - 10114682
Alignment:
| Q |
318 |
gaagagtaatgaaaagatttcactactcataagtcacttgcattaaataaaa |
369 |
Q |
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| T |
10114631 |
gaagaggagtgaaaagatttcactactcataagtcttttgcattaaaaaaaa |
10114682 |
T |
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