View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_high_18 (Length: 372)

Name: NF12740_high_18
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_high_18
NF12740_high_18
[»] chr3 (4 HSPs)
chr3 (43-372)||(39140449-39140784)
chr3 (192-255)||(41264839-41264902)
chr3 (180-247)||(48660129-48660196)
chr3 (190-255)||(36343802-36343867)
[»] chr8 (2 HSPs)
chr8 (180-246)||(2259804-2259870)
chr8 (180-246)||(35699652-35699718)
[»] chr2 (2 HSPs)
chr2 (180-250)||(36330481-36330551)
chr2 (215-279)||(13783439-13783503)
[»] chr7 (2 HSPs)
chr7 (190-250)||(23777067-23777127)
chr7 (216-290)||(19367103-19367177)
[»] chr5 (3 HSPs)
chr5 (190-250)||(27514504-27514564)
chr5 (130-196)||(34071307-34071373)
chr5 (216-266)||(43259889-43259939)
[»] chr4 (7 HSPs)
chr4 (188-256)||(21188100-21188168)
chr4 (63-172)||(43955454-43955573)
chr4 (216-266)||(3257828-3257878)
chr4 (180-282)||(32896611-32896713)
chr4 (188-261)||(27246246-27246319)
chr4 (190-243)||(43955631-43955684)
chr4 (194-246)||(10350582-10350634)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 43 - 372
Target Start/End: Original strand, 39140449 - 39140784
Alignment:
Q  43 aaaactaaaccattactatccaattatgaaactgaaatagttcgatttggttcaaaac-----ggttcaactcaaaacagttcagtaactacaatttaat 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     ||||| |||| |||||||||| |||||||||||  ||    
T  39140449 aaaactaaaccattactatccaattatgaaactgaaatagttcgattcggttcaaaacagttcggttcgactcgaaacagttcaataactacaattcgat 39140548  T
Q  138 ttcgtttggtttttatatattctttttaacggtactagtcataacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatt 237  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |    
T  39140549 ttcgtttggtttttatatattctttttaacggtaccagcgataacacttcggttcaattcaaaatgcagacaattcgattcagttcaatcattttaaact 39140648  T
Q  238 taacaaacagttccattcgattc-aatttttattccaaactgagccgtgcccactctttcaaataattagtttttctctcaatttgttcttctctttttc 336  Q
    |||||||||||| |||||||||| ||||||||||||||||||| || | ||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  39140649 taacaaacagtttcattcgattcaaatttttattccaaactgaaccatacccactccttcaaataatcagtttttctctcaatttgttcttctctttttc 39140748  T
Q  337 agattcgtgttttcaatgtagtatttgtaccatgac 372  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39140749 agattcgtgttttgaatgtagtatttgtaccatgac 39140784  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 41264902 - 41264839
Alignment:
Q  192 cagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattc 255  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  41264902 cagttcaaaatacaaacaattcgattcagttcaattattttaaatttaacaaacagttcgattc 41264839  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 48660196 - 48660129
Alignment:
Q  180 aacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacag 247  Q
    |||| ||||||||| ||| ||||||| |||||| |||||| |||||| ||||||||||| ||||||||    
T  48660196 aacagttcgattcaattcgaaatgcaaacaatttgattcaattcaattattttaaattttacaaacag 48660129  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 36343802 - 36343867
Alignment:
Q  190 ttcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattc 255  Q
    |||| ||||||||||| ||||||   |||| |||||| ||||||||||||||| ||||||| ||||    
T  36343802 ttcaattcaaaatgcaaacaatttagttcaattcaattattttaaatttaacatacagttcaattc 36343867  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 2259870 - 2259804
Alignment:
Q  180 aacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaaca 246  Q
    |||| |||| |||| || |||||||| ||| |||||||| ||||||| |||||||||||||||||||    
T  2259870 aacagttcggttcaatttaaaatgcaaacagttcgattcggttcaattattttaaatttaacaaaca 2259804  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 35699652 - 35699718
Alignment:
Q  180 aacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaaca 246  Q
    |||| |||| |||||||| ||||||| ||||||| || ||||||||| |||||||||||| ||||||    
T  35699652 aacagttcggttcagttcgaaatgcaaacaattcaatccagttcaattattttaaatttatcaaaca 35699718  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 36330481 - 36330551
Alignment:
Q  180 aacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttc 250  Q
    |||| ||| ||||||||||||||||| | | |||||||||||||| | ||||||| ||||||||| |||||    
T  36330481 aacagttcaattcagttcaaaatgcaaatagttcgattcagttcagttattttaattttaacaaatagttc 36330551  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 13783439 - 13783503
Alignment:
Q  215 attcagttcaatcattttaaatttaacaaacagttccattcgattcaatttttattccaaactga 279  Q
    |||||||| | | ||||||||||||||||||| |||  |||||||| |||||||| |||||||||    
T  13783439 attcagtttagttattttaaatttaacaaacaattcagttcgattcgatttttatcccaaactga 13783503  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 23777127 - 23777067
Alignment:
Q  190 ttcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttc 250  Q
    ||||||||||||| || ||| |||  ||||||||||| |||||||||||| ||||||||||    
T  23777127 ttcagttcaaaatacaaacatttcagttcagttcaattattttaaatttagcaaacagttc 23777067  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 19367177 - 19367103
Alignment:
Q  216 ttcagttcaatcattttaaatttaacaaacagttccattcgattcaatttttattccaaactgagccgtgcccac 290  Q
    ||||||||| | |||||||||||| ||||||||||  ||||||||| |||| || || |||||| || |||||||    
T  19367177 ttcagttcagttattttaaatttagcaaacagttcagttcgattcagttttcatcccgaactgaaccatgcccac 19367103  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 27514504 - 27514564
Alignment:
Q  190 ttcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttc 250  Q
    |||||||| ||||||| ||||||   ||||||||||| |||| ||||||||||||||||||    
T  27514504 ttcagttcgaaatgcaaacaatttagttcagttcaattatttaaaatttaacaaacagttc 27514564  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 34071307 - 34071373
Alignment:
Q  130 aatttaatttcgtttggtttttatatattctttttaacggtactagtcataacacttcgattcagtt 196  Q
    |||||||||||||||||||||| |||||| |||  || ||||| | | |||||| ||||||||||||    
T  34071307 aatttaatttcgtttggtttttttatattttttacaatggtaccaataataacaattcgattcagtt 34071373  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 43259889 - 43259939
Alignment:
Q  216 ttcagttcaatcattttaaatttaacaaacagttccattcgattcaatttt 266  Q
    ||||||||| | |||||||||||||||||||||||  ||||||||| ||||    
T  43259889 ttcagttcagttattttaaatttaacaaacagttcagttcgattcagtttt 43259939  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 21188168 - 21188100
Alignment:
Q  188 gattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattcg 256  Q
    |||| |||||||||| || ||| || ||||| ||| ||| |||||||||||| ||||||||||||||||    
T  21188168 gatttagttcaaaatacaaacagtttgattcggtttaataattttaaatttatcaaacagttccattcg 21188100  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 43955454 - 43955573
Alignment:
Q  63 caattatgaaactgaaatagttcgatttggttcaaaac-----ggttcaactcaaaacagttcagtaactaca-----atttaatttcgtttggttttta 152  Q
    ||||| ||||||||||| ||||||||| ||||||||||     ||||||| |  ||||||||| ||||||| |     |||| ||||||||||||||||     
T  43955454 caattctgaaactgaaacagttcgattcggttcaaaacagttcggttcaatttgaaacagttcggtaactaaactaaaatttgatttcgtttggtttttt 43955553  T
Q  153 tatattctttttaacggtac 172  Q
    |||||| |||| ||||||||    
T  43955554 tatatttttttcaacggtac 43955573  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 3257828 - 3257878
Alignment:
Q  216 ttcagttcaatcattttaaatttaacaaacagttccattcgattcaatttt 266  Q
    ||||||||||| ||| |||||||| ||||||||||  ||||||||||||||    
T  3257828 ttcagttcaattattataaatttaccaaacagttcagttcgattcaatttt 3257878  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 32896611 - 32896713
Alignment:
Q  180 aacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattcgattcaatttttattccaaactga 279  Q
    |||| |||| |||||||||||||||| ||| |||| ||||  ||| | || ||||||||| ||||||||||  |||| || | |||||||||| || |||    
T  32896611 aacaattcggttcagttcaaaatgcaaacagttcggttcaactcagttatcttaaatttagcaaacagttcagttcggtttagtttttattccgaagtga 32896710  T
Q  280 gcc 282  Q
    |||    
T  32896711 gcc 32896713  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 27246319 - 27246246
Alignment:
Q  188 gattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattcgattca 261  Q
    |||| |||||||||| || |||||| ||||| ||| ||| |||||||||||| |||||| ||| ||||| ||||    
T  27246319 gatttagttcaaaatacaaacaatttgattcggtttaataattttaaatttatcaaacaattcaattcggttca 27246246  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 43955631 - 43955684
Alignment:
Q  190 ttcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaa 243  Q
    |||||||| ||||||| ||| ||||||| |||||| | ||||||||||||||||    
T  43955631 ttcagttcgaaatgcaaacagttcgattaagttcagttattttaaatttaacaa 43955684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 10350634 - 10350582
Alignment:
Q  194 gttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaaca 246  Q
    ||||| || ||| ||| ||| |||||||||||| |||||||||||||||||||    
T  10350634 gttcagaaagcaaacagttcaattcagttcaattattttaaatttaacaaaca 10350582  T

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