View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_high_2 (Length: 691)
Name: NF12740_high_2
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 19 - 636
Target Start/End: Original strand, 4089535 - 4090152
Alignment:
| Q |
19 |
cctacgaatagaaagaaa-ctgtttgaatgtttgtctttcaacgcaaacaaaagaaaccccatttcttgaaaacaagtgttccgtaccaagcatgttccc |
117 |
Q |
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|||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4089535 |
cctacgaatagaaagaaagctgtttgaatttgtgtctttcaacgcaaacaaaagaaaccccatttcttgaaaacaagtgttacgtaccaagcatgttccc |
4089634 |
T |
|
| Q |
118 |
agaatcagatgatggtaacaacatagaacttggtgctactttactcactactactagaggtagcgtgagcaacaagaaatggcttcaatggttatacaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4089635 |
agaatcagatgatggtaacaacatagaacttggtgctactttactcactactactagaggtagcgtgtgcaacaagaaatggcttcaatggttatacaag |
4089734 |
T |
|
| Q |
218 |
aagcctacaacttctagggctaattatgaagaatctacatcacccctttcctcagtagaactgcgcgttacgaatgatattgctggaattgtgaaggaga |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4089735 |
aagcctacaacttctagggctaactatgaagaatctacatcacctctttcctcagtagaactgcgcgttacgaatgatattgctggaattgtgaaggaga |
4089834 |
T |
|
| Q |
318 |
aggacttgaagtctcttcttgagtttggtggggttggtagagtttgtgatgttctccgtggtcaaattcatcactcatcagcagaggtaataattctctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4089835 |
aggacttgaagtctcttcttgagtttggtggggttggtagagtttgtgatgttctccgtggtcaaattcatcactcatcagcagaggtaataattctctt |
4089934 |
T |
|
| Q |
418 |
taatatcatcgatggatgtttgatcaaatatataaatgctttcttggtttatttaagtgttagggttgtgttgcgtataatatctgcgtggcaccaacac |
517 |
Q |
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| T |
4089935 |
taatatcatcgatggatgtttgatcaaatatataaatgctttcttggttta-ttaagtgttagggttgcgttgcgtataatatctgcgtggcaccaacac |
4090033 |
T |
|
| Q |
518 |
ttttgattgaaggtatgttccggtgtccaacatgtgtcagtgtctgacacaacaccggcacaagtgattgctttgagttatgtcattttctcaaaatttt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4090034 |
ttttgattgaaggtatgttccggtgtccaacatgtgtcagtgtctgacacaacaccggcacaagtgattgctttgagttatgtcattttctcaaaatttt |
4090133 |
T |
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| Q |
618 |
actggggtcaacatctcaa |
636 |
Q |
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|| |||||||||||||||| |
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| T |
4090134 |
accggggtcaacatctcaa |
4090152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 293 - 397
Target Start/End: Complemental strand, 42594532 - 42594428
Alignment:
| Q |
293 |
gatattgctggaattgtgaaggagaaggacttgaagtctcttcttgagtttggtggggttggtagagtttgtgatgttctccgtggtcaaattcatcact |
392 |
Q |
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|||||||||| ||||||||| ||||||||||||| |||||||||||| |||||||| |||| | |||||||||| |||| | |||||||| ||| |||| |
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| T |
42594532 |
gatattgctgaaattgtgaaaaagaaggacttgaaatctcttcttgagcttggtgggattggcatagtttgtgattttcttcatggtcaaagtcaacact |
42594433 |
T |
|
| Q |
393 |
catca |
397 |
Q |
| |
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||||| |
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| T |
42594432 |
catca |
42594428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 612
Target Start/End: Complemental strand, 7942373 - 7942269
Alignment:
| Q |
508 |
gcaccaacacttttgattgaaggtatgttccggtgtccaacatgtgtcagtgtctgacacaacaccggcacaagtgattgctttgagttatgtcattttc |
607 |
Q |
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|||||||||||| |||| ||||| ||| ||||||| ||| ||||||||||| |||||| ||| | |||| |||||| | |||| |||||||||| || |
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| T |
7942373 |
gcaccaacacttctgatctaaggtgtgtcgtggtgtccgacacgtgtcagtgtccgacacagcactgacacatgtgattacattgaattatgtcattgtc |
7942274 |
T |
|
| Q |
608 |
tcaaa |
612 |
Q |
| |
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||||| |
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|
| T |
7942273 |
tcaaa |
7942269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 573
Target Start/End: Original strand, 29651731 - 29651764
Alignment:
| Q |
540 |
gtgtccaacatgtgtcagtgtctgacacaacacc |
573 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |
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| T |
29651731 |
gtgtccaacatgtgtcagtgtctgacacgacacc |
29651764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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