View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_high_27 (Length: 322)
Name: NF12740_high_27
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 38154073 - 38153883
Alignment:
| Q |
12 |
aagaaaaaatggaggtttttaggtttaacaaaacaatgttgttaatgatgattatgacggctatgatgtggaacatggcaaaagctgaggagcattttgt |
111 |
Q |
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| T |
38154073 |
aagaaaaaatggaggtttttaggtttaacaaaacaatgttgttaatgatgattatgacggctatgatgtggaacatggcaaaagctgaggagcattttgt |
38153974 |
T |
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| Q |
112 |
tggagggggaaggcaaggatggatccctggtaaaaacttgacaaaatggtccttgaatgagcactttcgtgtgaatgattggctatgtaag |
202 |
Q |
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| T |
38153973 |
tggagggggaaagcaaagatggatccctggtaataacttgacaaaatggtccttgaatgagcactttcgtgtgaatgattggttatgtaag |
38153883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 38160128 - 38159945
Alignment:
| Q |
19 |
aatggaggtttttaggtttaacaaaacaatgttgttaatgatgattatgacggctatgatgtggaacatggcaaaagctgaggagcattttgttggaggg |
118 |
Q |
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| T |
38160128 |
aatggaggctttgagcttgaacaaaaaaatgttgttgatgatgattatgacggctatgatttggaacatggcaaaagctgaggagcattttgttggaggg |
38160029 |
T |
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| Q |
119 |
ggaaggcaaggatggatccctggtaaaaacttgacaaaatggtccttgaatgagcactttcgtgtgaatgattggctatgtaag |
202 |
Q |
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| T |
38160028 |
ggaaggcaaggatggaaccctagtaataacttgacaaaatggtccttgaatgagcactttcatgtgaatgattggctatgtaag |
38159945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 38223409 - 38223330
Alignment:
| Q |
15 |
aaaaaatggaggtttttaggtttaacaaaacaatgttgttaatgatgattatgacggctatgatgtggaacatggcaaaa |
94 |
Q |
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| T |
38223409 |
aaaaaatggaggttttgagcttaaacaaaaacatgttgttgaagatgattatgatggctatgatgtggagcatggcaaaa |
38223330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 38229821 - 38229742
Alignment:
| Q |
15 |
aaaaaatggaggtttttaggtttaacaaaacaatgttgttaatgatgattatgacggctatgatgtggaacatggcaaaa |
94 |
Q |
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| T |
38229821 |
aaaaaatggaggttttgagcttaaacaaaaacatgttgttgaagatgattatgatggctatgatgtggagcatggcaaaa |
38229742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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