View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_high_29 (Length: 288)
Name: NF12740_high_29
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 37184916 - 37184646
Alignment:
| Q |
1 |
taaaaagtgttgtcccatggacccttctgcaattttaataaaaaggagattgaccatggtagctactagaataggaagcatgggatagtcccctcaatcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
37184916 |
taaaaagtgttgtcccatggacccttctgcaattttaataaaaaggagattgaccatggtagctactagaataggaagcatgggatagttctctcaatcc |
37184817 |
T |
|
| Q |
101 |
attcnnnnnnna-tgcttgaagggccattttattactatatt-tgttaatatagttccatgcctatcaagctcctaataaataattactactgataatga |
198 |
Q |
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|||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37184816 |
attctttttttaatgcttgaagggccattttattactatattatgttaata--gttccatgcctatcaagctcctaataaataattactactgataatga |
37184719 |
T |
|
| Q |
199 |
caaatatttttgtaaagtaagaaataatttctcttttctatatgtttttagttcgtgatttatttgttaaaat |
271 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37184718 |
caaatatttttgtaaagtaagtaataatttctcttttctatatgtttttagttcgtgatttatttgttaaaat |
37184646 |
T |
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