View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12740_high_31 (Length: 280)
Name: NF12740_high_31
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_high_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 1180931 - 1181183
Alignment:
| Q |
17 |
aaattggtttccattatttagtgctagctatgcaccactaccttagtaccattaatatttctaatcacactatataatagtgtttcatttcatgttcact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180931 |
aaattggtttccattatttagtgctagctatgcaccactaccttagtaccattaatatttctaatcacactatataatagtgtttcatttcatgttcact |
1181030 |
T |
|
| Q |
117 |
acatttatacaaattctttgcctttaaacttaaggaagatacataaatgtactttacttgagctagagaaaagcaccattattcctttttcttatccaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1181031 |
acatttatacaaattctttgcctttaaacttaaggaagatacataaatgtactttacttgagctagagaaaagcaccattattcctttttcttatccaat |
1181130 |
T |
|
| Q |
217 |
aaaaacaaacaaaaatgttacaactaattattattccaatcaatcatattctt |
269 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1181131 |
aaaaacaaacaaaaatgttgcaactaattattattccaatcaatcatattctt |
1181183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University