View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_high_34 (Length: 244)
Name: NF12740_high_34
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5692670 - 5692435
Alignment:
| Q |
1 |
gtgatatgtagtggaacacttattacaattgataaattctccttcaccttcccatctccttcataaactaaacaaacaatgtcatgtatggaagcttcaa |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5692670 |
gtgatatgtagcggaacacttattacaattgataaattctccttcaccttcccatc--cttcataaactaaacaaacaatgtcatgtatggaagcttcaa |
5692573 |
T |
|
| Q |
101 |
catcattttctagtgtacnnnnnnngacttcccttaagtccaatgcccaaaaataataattaattatgtgcataaaagcacaggaacggtgatttatatg |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
5692572 |
catcattttctagtgtacaagaaaagacttcccttaagtccaatgcccaaaaataataattaattatgtgcataaaagcacaagaacggtgatatatatg |
5692473 |
T |
|
| Q |
201 |
tggaggggcgcttattgcagttaataaattccccttct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5692472 |
tggaggggcgcttattgcagttaataaattccccttct |
5692435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 5668966 - 5668722
Alignment:
| Q |
2 |
tgatatgtagtggaacacttattacaattgataaattctccttcaccttcccatctccttcataaactaaacaaacaatgtcatgtatg------gaagc |
95 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |
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| T |
5668966 |
tgatatgtaatggaacacttattacaattgataaattctccttcaccttcccatc--cttcgtaaactaaacaaacaatgtcatgtatgtgtatggaagc |
5668869 |
T |
|
| Q |
96 |
ttcaacatcattttctagtgtacnnnnnnn----gacttcccttaagtccaatgcccaaaaataataattaattatgtgcataaaagcacaggaacggtg |
191 |
Q |
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| T |
5668868 |
ttcaacatcattttctagtgtacgtacaagaaaagacttcccttaagtccaatgcccaaaaataataattaattatgtgcataaaagcacaagaacggtg |
5668769 |
T |
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| Q |
192 |
atttatatgtggaggggcgcttattgcagttaataaattccccttct |
238 |
Q |
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| T |
5668768 |
atatatatgtggaggggcgcttattgcagttaataaattccccttct |
5668722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 5678469 - 5678226
Alignment:
| Q |
2 |
tgatatgtagtggaacacttattacaattgataaattctccttcaccttcccatctccttcataaactaaacaaacaatgtcatgtatg------gaagc |
95 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |
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| T |
5678469 |
tgatatgtaatggaacacttattacaattgataaattctccttcaccttcccatc--cttcgtaaactaaacaaacaatgtcatgtatgtgtatggaagc |
5678372 |
T |
|
| Q |
96 |
ttcaacatcattttctagtgtacnnnnnnn----gacttcccttaagtccaatgcccaaaaataataattaattatgtgcataaaagcacaggaacggtg |
191 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5678371 |
ttcaacatcattttctagtgtacgtacaagaaaagacttcc-ttaagtccaatgcccaaaaataataattaattatgtgcataaaagcacaagaacggtg |
5678273 |
T |
|
| Q |
192 |
atttatatgtggaggggcgcttattgcagttaataaattccccttct |
238 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678272 |
atatatatgtggaggggcgcttattgcagttaataaattccccttct |
5678226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 5744167 - 5744109
Alignment:
| Q |
17 |
cacttattacaattgataaattctccttcaccttcccatctccttcataaactaaacaaac |
77 |
Q |
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| T |
5744167 |
cacttattacaattgataaattctccttcaccttcgca--tccttcataaacaaaacaaac |
5744109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 5781126 - 5781068
Alignment:
| Q |
17 |
cacttattacaattgataaattctccttcaccttcccatctccttcataaactaaacaaac |
77 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||| |
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| T |
5781126 |
cacttattacaattgataaattctccttcaccttcgca--tccttcataaacaaaacaaac |
5781068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5792321 - 5792271
Alignment:
| Q |
1 |
gtgatatgtagtggaacacttattacaattgataaattctccttcaccttc |
51 |
Q |
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||||||||| ||||||||| || |||||||||||||||||||||||||||| |
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| T |
5792321 |
gtgatatgtggtggaacacatactacaattgataaattctccttcaccttc |
5792271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 5788841 - 5788811
Alignment:
| Q |
76 |
acaatgtcatgtatggaagcttcaacatcat |
106 |
Q |
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| T |
5788841 |
acaatgtcatgtatggaagcttcaacatcat |
5788811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5788865 - 5788837
Alignment:
| Q |
1 |
gtgatatgtagtggaacacttattacaat |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5788865 |
gtgatatgtagtggaacacttattacaat |
5788837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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