View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_high_35 (Length: 242)
Name: NF12740_high_35
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 38153694 - 38153526
Alignment:
| Q |
47 |
gttaagacgagaatccaaattaatcaatacatctaattaaactcttcaattctgaacaacctttgtccattttttatatttgtttctgaaaattttattg |
146 |
Q |
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| T |
38153694 |
gttaagacgagaatccaaattaatcaatacatctaa----actcttcaattctgaacaacctttgtccattttttatatttgtttctgaaaattttattg |
38153599 |
T |
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| Q |
147 |
tgttttcataaggattacaccctagatcttggtattcttgccaccgtgcaatgaaaataaacagtgtatattctacat |
224 |
Q |
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| T |
38153598 |
tgttttcataaggattacaccctagatcttggtattcttgcc-----gcaatgaaaataaacagtgtatattctacat |
38153526 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 38159824 - 38159729
Alignment:
| Q |
47 |
gttaagacgagaatccaaattaatcaatacatctaattaaactcttcaattctgaacaacctttgtccattttttatatttgtttctgaaaattttatt |
145 |
Q |
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|||||||||||| |||||| |||||||||||| ||||| ||||||||| |||||||| ||| |||| ||| | | || ||||||||||||||||| |
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| T |
38159824 |
gttaagacgagagtccaaactaatcaatacat---tttaaaatcttcaattttgaacaacgtttttccaatttattcaattatttctgaaaattttatt |
38159729 |
T |
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