View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_high_38 (Length: 240)

Name: NF12740_high_38
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_high_38
NF12740_high_38
[»] chr3 (17 HSPs)
chr3 (16-237)||(5692740-5692954)
chr3 (16-170)||(5678609-5678760)
chr3 (16-170)||(5669106-5669257)
chr3 (17-168)||(5792310-5792457)
chr3 (17-165)||(5788857-5789005)
chr3 (16-140)||(5744166-5744290)
chr3 (16-140)||(5781125-5781249)
chr3 (16-80)||(5695119-5695183)
chr3 (123-164)||(5668965-5669006)
chr3 (188-225)||(5669053-5669090)
chr3 (123-164)||(5678468-5678509)
chr3 (188-225)||(5678556-5678593)
chr3 (129-166)||(5751786-5751823)
chr3 (129-166)||(5788745-5788782)
chr3 (118-163)||(5668765-5668810)
chr3 (118-163)||(5678269-5678314)
chr3 (118-163)||(5692478-5692523)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 5692954 - 5692740
Alignment:
Q  16 caaaaggtaaacttcaatgtcattttctattgttacaattcatcggaaaccaaaatgcaccaaaaggcttcacttaattgaaaaacacaatttcagtgcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5692954 caaaaggtaaacttcaatgtcattttctattgttacaattcatcggaaaccaaaatgcaccaaaaggcttcacttaattgaaaaacacaatttcaatgcc 5692855  T
Q  116 acaaaataataattaattatgtgcaaatagacacaagaacggtgatatgtggtccnnnnnnnnnnnnnnnnntctccaaattacattgttggaatctaaa 215  Q
     |  |||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||    
T  5692854 tc--aataataattaattatgtgcaaatagacacaagaacggtgatatgtggtcc-----aaaaaaaaaaaatctccaaattacattgttggaatctaaa 5692762  T
Q  216 caaatttttgtacatcggaaat 237  Q
    ||||||||||||||||| ||||    
T  5692761 caaatttttgtacatcgaaaat 5692740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 5678760 - 5678609
Alignment:
Q  16 caaaaggtaaacttcaatgtcattttctattgttacaattcatcggaaaccaaaatgcaccaaaaggcttcacttaattgaaaaacacaatttcagtgcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5678760 caaaaggtaaacttcaatgtcattttctattgttacaattcatcggaaaccaaaatgcaccaaaaggcttcacttaattgaaaaacacaatttcagtgcc 5678661  T
Q  116 acaaaataataattaattatgtgcaaatagacacaagaacggtgatatgtggtcc 170  Q
     |||||||||||||||||||| | ||||||||||||||   ||||||||||||||    
T  5678660 tcaaaataataattaattatgagaaaatagacacaaga---gtgatatgtggtcc 5678609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 5669257 - 5669106
Alignment:
Q  16 caaaaggtaaacttcaatgtcattttctattgttacaattcatcggaaaccaaaatgcaccaaaaggcttcacttaattgaaaaacacaatttcagtgcc 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  5669257 caaaaggtaaacttcaatgtcattttctattgttacaaatcatcggaaaccaaaatgcaccaaaaggcttcacttaatcgaaaaacgcaatttcagtgcc 5669158  T
Q  116 acaaaataataattaattatgtgcaaatagacacaagaacggtgatatgtggtcc 170  Q
     |||||||||||||||||||| | ||||||||||||||   ||||||||||||||    
T  5669157 tcaaaataataattaattatgagaaaatagacacaaga---gtgatatgtggtcc 5669106  T

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Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 5792457 - 5792310
Alignment:
Q  17 aaaaggtaaacttcaatgtcattttctattgttacaattcatcggaaaccaaaatgcaccaaaaggcttcacttaattgaaaaacacaatttcagtgcca 116  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||     
T  5792457 aaaaggtaaacttcaatgtcattttcttgtgttacaattcatcggaaaccaaatggcaccaaaagtcttcacttaattgaaaaatacaatttcagtgcct 5792358  T
Q  117 caaaataataattaattatgtgcaaatagacacaagaacggtgatatgtggt 168  Q
    |  ||||||  ||||||||||||| |||||||||| ||||||||||||||||    
T  5792357 c--aataat--ttaattatgtgcacatagacacaaaaacggtgatatgtggt 5792310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 5789005 - 5788857
Alignment:
Q  17 aaaaggtaaacttcaatgtcattttctattgttacaattcatcggaaaccaaaatgcaccaaaaggcttcacttaattgaaaaacacaatttcagtgcca 116  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||| | |||||||||||||| | ||||||||||||||     
T  5789005 aaaaggtaaacttcaatgtcattttcttgtgttacaattcatcggaaaccaaatggcaccaaaagtcatcacttaattgaaagagacaatttcagtgcct 5788906  T
Q  117 caaaataataattaattatgtg--caaatagacacaagaacggtgatatgt 165  Q
    |||||||||  |||||||||||  || ||||||||||||||||||||||||    
T  5788905 caaaataat--ttaattatgtgcacatatagacacaagaacggtgatatgt 5788857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 5744290 - 5744166
Alignment:
Q  16 caaaaggtaaacttcaatgtcattttctattgttacaattcatcggaaaccaaaatgcaccaaaaggcttcacttaattgaaaaacacaatttcagtgcc 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  | |||||||| |||||||||||||||||| ||||||||||| ||    
T  5744290 caaaaggtaaacttcaatgtcattttctagtgttacaattcatcggaaaccaaatggtaccaaaagtcttcacttaattgaaaaagacaatttcagttcc 5744191  T
Q  116 acaaaataataattaattatgtgca 140  Q
      |||||||||||| ||||||||||    
T  5744190 tgaaaataataattgattatgtgca 5744166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 5781249 - 5781125
Alignment:
Q  16 caaaaggtaaacttcaatgtcattttctattgttacaattcatcggaaaccaaaatgcaccaaaaggcttcacttaattgaaaaacacaatttcagtgcc 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  | |||||||| |||||||||||||||||| ||||||||||| ||    
T  5781249 caaaaggtaaacttcaatgtcattttctagtgttacaattcatcggaaaccaaatggtaccaaaagtcttcacttaattgaaaaagacaatttcagttcc 5781150  T
Q  116 acaaaataataattaattatgtgca 140  Q
      |||||||||||| ||||||||||    
T  5781149 tgaaaataataattgattatgtgca 5781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 5695183 - 5695119
Alignment:
Q  16 caaaaggtaaacttcaatgtcattttctattgttacaattcatcggaaaccaaaatgcaccaaaa 80  Q
    ||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||  |||||||||    
T  5695183 caaaaggtaaacttcaatgtcattttctagtgttctaattcctcggaaaccaaatggcaccaaaa 5695119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 5669006 - 5668965
Alignment:
Q  123 aataattaattatgtgcaaatagacacaagaacggtgatatg 164  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  5669006 aataattaattatgtgcaaatagacacaagaactgtgatatg 5668965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 5669090 - 5669053
Alignment:
Q  188 tctccaaattacattgttggaatctaaacaaatttttg 225  Q
    |||| |||||||||||||||||||||||||||||||||    
T  5669090 tctcaaaattacattgttggaatctaaacaaatttttg 5669053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 5678509 - 5678468
Alignment:
Q  123 aataattaattatgtgcaaatagacacaagaacggtgatatg 164  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  5678509 aataattaattatatgcaaatagacacaagaactgtgatatg 5678468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 5678593 - 5678556
Alignment:
Q  188 tctccaaattacattgttggaatctaaacaaatttttg 225  Q
    |||| |||||||||||||||||||||||||||||||||    
T  5678593 tctcgaaattacattgttggaatctaaacaaatttttg 5678556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 5751823 - 5751786
Alignment:
Q  129 taattatgtgcaaatagacacaagaacggtgatatgtg 166  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  5751823 taattatgtgcaaatagacacaagatcggtgatatgtg 5751786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 5788782 - 5788745
Alignment:
Q  129 taattatgtgcaaatagacacaagaacggtgatatgtg 166  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  5788782 taattatgtgcaaatagacacaagatcggtgatatgtg 5788745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 5668810 - 5668765
Alignment:
Q  118 aaaataataattaattatgtgcaaatagacacaagaacggtgatat 163  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||    
T  5668810 aaaataataattaattatgtgcataaaagcacaagaacggtgatat 5668765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 5678314 - 5678269
Alignment:
Q  118 aaaataataattaattatgtgcaaatagacacaagaacggtgatat 163  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||    
T  5678314 aaaataataattaattatgtgcataaaagcacaagaacggtgatat 5678269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 5692523 - 5692478
Alignment:
Q  118 aaaataataattaattatgtgcaaatagacacaagaacggtgatat 163  Q
    ||||||||||||||||||||||| | |  |||||||||||||||||    
T  5692523 aaaataataattaattatgtgcataaaagcacaagaacggtgatat 5692478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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