View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_high_6 (Length: 496)
Name: NF12740_high_6
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Original strand, 14059447 - 14059915
Alignment:
| Q |
17 |
caaaagtacccttacatcaatacactacccaacctgaagtagnnnnnnnngccctctaattgaatgaaattaagaaactttgatcttggtgctagacatt |
116 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14059447 |
caaaagtacccttacatcattgcactacccaacctgaagtagttttttttgccctctaattgaatgaaattaagaaacttggatcttggtgctagacatt |
14059546 |
T |
|
| Q |
117 |
ttaatcacacatacttatttatttcattaaaaaatttgatgttctacttgggatagatagcacaccaagtttggataaaagtaagaaccaatgctagcat |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14059547 |
ttaatcacacatacttatttatttcattaaaatttttgatgttctacttgggatagatagcacaccaagtttggataaaagtaagaaccaatgctagcat |
14059646 |
T |
|
| Q |
217 |
tgcagctaagaaggcaatcatagcccatggtgtattgaaatgagtattgtaagcttgagccaaccatgtcttccatttgtttgtataatgtttttcaatt |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14059647 |
tgcagctaagaaggcaatcatagcccacggtgtattgaaatgggtattgtaagcttgagccaaccatgtcttccatttgtttgtataatgtttttcaatt |
14059746 |
T |
|
| Q |
317 |
tgaaccttgatgagaagatatctcctgctataagccaccgcatctgtataggaattgttgcaatacatttttgttggcaaatcgtcacccaaatcattga |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14059747 |
tgaaccttgatgagaagatatctcctgctataagccaccgcatctgtgtaggaattgttgcaatacatttttgttggcaaatcgtcacccaaatcattga |
14059846 |
T |
|
| Q |
417 |
agagttttgccaattcttcgtcacttccaagcaagttttgaaatacaccagctaatctaagttccttca |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14059847 |
agagttttgccaattcttcgtcacttccaagcaagttttgaaatacaccagctaatctaagctccttca |
14059915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 70 - 485
Target Start/End: Original strand, 14048136 - 14048544
Alignment:
| Q |
70 |
ctctaattgaatgaaattaagaaactttgatcttggtgctagacattttaatcacacatacttatttatttcattaaaaaatttgatgttctacttggga |
169 |
Q |
| |
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|||||||| |||||||||||||||| | |||| |||||||||||||||||||| ||| |||||||||| || || |||||| ||||| ||| |
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| T |
14048136 |
ctctaatttaatgaaattaagaaacatggatcacaatgctagacattttaatcaca------tatctatttcattagaatctt-gatgttttacttagga |
14048228 |
T |
|
| Q |
170 |
tagatagcacaccaagtttggataaaagtaagaaccaatgctagcattgcagctaagaaggcaatcatagcccatggtgtattgaaatgagtattgtaag |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048229 |
tagatagcacaccaagtttggataaaagtaagaaccaatgctagcattgcagctaaaaaggcaatcatagcccatggtgtattgaaatgagtattgtaag |
14048328 |
T |
|
| Q |
270 |
cttgagccaaccatgtcttccatttgtttgtataatgtttttcaatttgaaccttgatgagaagatatctcctgctataagccaccgcatctgtatagga |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| ||| ||||| |
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| T |
14048329 |
cttgagccaaccatgtcttccatttgtttgtgtaatgtttttcaatttgaatcttgatgagaagatatttcctgctataagccactgcatttgtgtagga |
14048428 |
T |
|
| Q |
370 |
attgttgcaatacatttttgttggcaaatcgtcacccaaatcattgaagagttttgccaattcttcgtcacttccaagcaagttttgaaatacaccagct |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14048429 |
attgttgcaatacatttttgttggcaaatcgtcacccaaatcattgaagagctttgccaattcttcgtcacttccaagcaagttttgaaatacaccagct |
14048528 |
T |
|
| Q |
470 |
aatctaagttccttca |
485 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
14048529 |
aatctaagctccttca |
14048544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 180 - 477
Target Start/End: Original strand, 15873197 - 15873494
Alignment:
| Q |
180 |
accaagtttggataaaagtaagaaccaatgctagcattgcagctaagaaggcaatcatagcccatggtgtattgaaatgagtattgtaagcttgagccaa |
279 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||| || | ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15873197 |
accatgtttggatgaaagtaagaactaatgccagtaatgcagctaaaaaggcaatcatagcccatggtgtattgaaatgagtgttgtaagcttgagccaa |
15873296 |
T |
|
| Q |
280 |
ccatgtcttccatttgtttgtataatgtttttcaatttgaaccttgatgagaagatatctcctgctataagccaccgcatctgtataggaattgttgcaa |
379 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||| |||| || ||||||| || || |||| ||| ||||||||||||||| |
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| T |
15873297 |
ccatgtcttccatttatttgtgtaatgcttttcaatttgaagcttgatgagaatatatttcttgctataggctactgcatttgtgtaggaattgttgcaa |
15873396 |
T |
|
| Q |
380 |
tacatttttgttggcaaatcgtcacccaaatcattgaagagttttgccaattcttcgtcacttccaagcaagttttgaaatacaccagctaatctaag |
477 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
15873397 |
tacatttttgttggcaaatcatcacccaaatcattgaagagttttgccaattctttgtcgcttccaagcaagttttgaaatacaccagctgatctaag |
15873494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 180 - 477
Target Start/End: Complemental strand, 15900850 - 15900553
Alignment:
| Q |
180 |
accaagtttggataaaagtaagaaccaatgctagcattgcagctaagaaggcaatcatagcccatggtgtattgaaatgagtattgtaagcttgagccaa |
279 |
Q |
| |
|
|||| |||||||| ||||||||||| || || || | ||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15900850 |
accaggtttggatgaaagtaagaactaaagccagtactgcggctaaaaaagcaatcatagcccatggtgtattgaaatgagtgttgtaagcttgagccaa |
15900751 |
T |
|
| Q |
280 |
ccatgtcttccatttgtttgtataatgtttttcaatttgaaccttgatgagaagatatctcctgctataagccaccgcatctgtataggaattgttgcaa |
379 |
Q |
| |
|
||||||||||||||| ||| | ||||| |||||||||| | |||||||| || |||| || ||||||| || || || | ||| ||| | || |||| |
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| T |
15900750 |
ccatgtcttccatttatttttgtaatgcttttcaatttcatgcttgatgaaaatatatttcttgctataggctactgcttttgtgtagtcaaagtggcaa |
15900651 |
T |
|
| Q |
380 |
tacatttttgttggcaaatcgtcacccaaatcattgaagagttttgccaattcttcgtcacttccaagcaagttttgaaatacaccagctaatctaag |
477 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
15900650 |
tacatttttgttggcaaatcatcacccaaatcattgaagagttttgccaattcttcatcgcttccaagcaagttttgaaatacaccagctgatctaag |
15900553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 180 - 469
Target Start/End: Complemental strand, 15921900 - 15921611
Alignment:
| Q |
180 |
accaagtttggataaaagtaagaaccaatgctagcattgcagctaagaaggcaatcatagcccatggtgtattgaaatgagtattgtaagcttgagccaa |
279 |
Q |
| |
|
|||| |||||||| ||||||||||| || || || | ||| ||| | || |||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
15921900 |
accaggtttggatgaaagtaagaactaaagccagtactgcggctgaaaaagcaatcatagcccatggtgtattgaaatgagtgttgtaagcttgagctaa |
15921801 |
T |
|
| Q |
280 |
ccatgtcttccatttgtttgtataatgtttttcaatttgaaccttgatgagaagatatctcctgctataagccaccgcatctgtataggaattgttgcaa |
379 |
Q |
| |
|
||||||||||||||| ||| | ||||| |||||||||| | ||||||||||| |||| || ||||||| || || || | ||| |||| | ||| |||| |
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|
| T |
15921800 |
ccatgtcttccatttatttttgtaatgcttttcaatttcatgcttgatgagaatatatttcttgctataggctactgcttttgtgtaggcaatgtggcaa |
15921701 |
T |
|
| Q |
380 |
tacatttttgttggcaaatcgtcacccaaatcattgaagagttttgccaattcttcgtcacttccaagcaagttttgaaatacaccagct |
469 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||| |
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| T |
15921700 |
tacatttttgttggcaaatcatcacccaaatcattgaagagttttgccatatcttcatcgctcccaagcaagttttgaaatacaccagct |
15921611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 241 - 477
Target Start/End: Original strand, 15880069 - 15880305
Alignment:
| Q |
241 |
ccatggtgtattgaaatgagtattgtaagcttgagccaaccatgtcttccatttgtttgtataatgtttttcaatttgaaccttgatgagaagatatctc |
340 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||| |||| ||||||||||| | |||||||||| |||| || |
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| T |
15880069 |
ccatggtgtattgaaatgagtattgcaagcttgagccaatcatatcttccatttatttgtgtaatttttttcaatttcatgtttgatgagaatatatttc |
15880168 |
T |
|
| Q |
341 |
ctgctataagccaccgcatctgtataggaattgttgcaatacatttttgttggcaaatcgtcacccaaatcattgaagagttttgccaattcttcgtcac |
440 |
Q |
| |
|
||||||| || || || | ||| ||| | ||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| | |
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|
| T |
15880169 |
ttgctataggctactgcttttgtgtagtcaatgtggcaatacatttttattggcaaatcatcacccaaatcattgaagagttttgccaattctttgtcgc |
15880268 |
T |
|
| Q |
441 |
ttccaagcaagttttgaaatacaccagctaatctaag |
477 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
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| T |
15880269 |
ttccaagcaagttttgaaatacaccagctgatctaag |
15880305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 409 - 483
Target Start/End: Original strand, 15880512 - 15880586
Alignment:
| Q |
409 |
atcattgaagagttttgccaattcttcgtcacttccaagcaagttttgaaatacaccagctaatctaagttcctt |
483 |
Q |
| |
|
|||||||||||| |||||||||||||| || || |||||||||||||||| |||| | ||||||||||||||||| |
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|
| T |
15880512 |
atcattgaagagatttgccaattcttcatcgctcccaagcaagttttgaagtacatcggctaatctaagttcctt |
15880586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 477
Target Start/End: Original strand, 44137215 - 44137279
Alignment:
| Q |
413 |
ttgaagagttttgccaattcttcgtcacttccaagcaagttttgaaatacaccagctaatctaag |
477 |
Q |
| |
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|||||||| |||||||||||||| | ||| || ||||||||| ||||||||||||| ||||||| |
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| T |
44137215 |
ttgaagagatttgccaattcttcattgctttcaggcaagttttaaaatacaccagctgatctaag |
44137279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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