View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_high_9 (Length: 468)
Name: NF12740_high_9
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 43710657 - 43710302
Alignment:
| Q |
1 |
tttaggcttgttgtatttaatcagttcgatagcaccatgtcaatcaaacaacgtacgattcatcctctttccttgtctgtttcattttattcccttgctt |
100 |
Q |
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| T |
43710657 |
tttaggcttgttgtatttaatcagttcgatagcaccatgtcaatcaaacaacgtacgattcatcctctttccttgtctgtttcattttattcccttgctt |
43710558 |
T |
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| Q |
101 |
tcaaggttaagataatgagtttaaatggaatacacttacattgtaaatcttttttctttgagtcatacatttagtgtatgtaagtcaatcagagtccatt |
200 |
Q |
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| T |
43710557 |
tcaaggttaagataatgagtttaaatggaatacacttacattgtaaatcttttttctttgactcatacatttagtgtatgtaagtcaatcagagtccatt |
43710458 |
T |
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| Q |
201 |
aagtcactcttataacttatcnnnnnnnnnnnnnggactgaatcttgtaacttaatcttaaatcaatggtctgtagtggcgcaatataatggactttcat |
300 |
Q |
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| T |
43710457 |
aagtcactcttataacttatc--tttttttttttggactgaatcttgtaacttaatcttaaatcaatggtctgtagtggcgcaatataatggactttcat |
43710360 |
T |
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| Q |
301 |
gggatgtaagtgtaaaattaatttacactcacagtgtatgccccttattctcctaatg |
358 |
Q |
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| T |
43710359 |
gggatgtaagtgtaaaattaatttacactcaaagtgtatgccccttattctcctaatg |
43710302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 450
Target Start/End: Complemental strand, 43710256 - 43710210
Alignment:
| Q |
404 |
acgggttaaacaaggggtggaacttttgtttcctcccaacgtaatac |
450 |
Q |
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| T |
43710256 |
acgggttaaacaaggggtggaacttttgtttcctcccaacgtaatac |
43710210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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