View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_1 (Length: 708)
Name: NF12740_low_1
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 12819531 - 12819336
Alignment:
| Q |
16 |
acttatgactttaatttaacagcttgagactaaattcataactcatcattgcacccgatatgaataatactgcatagtactctatgatacatacctcaat |
115 |
Q |
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| T |
12819531 |
acttatgactttaatttaacagcttgagactaaattcataactcatcattgcacccgatatgaataatactgcatagtacgctatgatacatacctcaat |
12819432 |
T |
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| Q |
116 |
ggataatgataactgattcatacgaagaatgtcgtggtcctttgacattgttccttatattgcttttctgatatctttgcatgacctgttgagttt |
211 |
Q |
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| T |
12819431 |
tgataatgataactgattcatacgaagaatgccgtggtcctttgacattgttccttatattgcttttctgagatctttgcaggacctgttgagttt |
12819336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 220 - 351
Target Start/End: Complemental strand, 12819285 - 12819154
Alignment:
| Q |
220 |
ttgctttcaccaacttttgttttcaagaaaatagtgcagaaaatatggtctatatctatatactaaaagaaaatctctctttgaatgttttcccactctc |
319 |
Q |
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| T |
12819285 |
ttgctttcaccaacttttgttttcaagaaaatagtgcagaaaatatggtctatatctatatactataagaaaatctctctttgaatgttttcccactctc |
12819186 |
T |
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| Q |
320 |
gattttattgggtgtcttatatatttttaaca |
351 |
Q |
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| T |
12819185 |
gatttcattgggtgtcttatatatttttaaca |
12819154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 384 - 493
Target Start/End: Complemental strand, 12819138 - 12819029
Alignment:
| Q |
384 |
tttgcaagaatctagggacttctttaccataattacttaattattatatatacatagcttctgttgtgtgtaatcacttgactcagtcattttcgtgctt |
483 |
Q |
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| T |
12819138 |
tttgcaagaatctagggacttctttaccataattacttaattattatatatacatagcttcagttgtgtgtaatcacttgactcagtcattttcgtgctt |
12819039 |
T |
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| Q |
484 |
cttcaactac |
493 |
Q |
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| T |
12819038 |
cttcaactac |
12819029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 562 - 703
Target Start/End: Complemental strand, 12818959 - 12818812
Alignment:
| Q |
562 |
aaatcacttcttctatggttgccttgaactcagctgcctacatattgtcacgaagctttttgcgttcgtcaaatttcggaatggaaaccaaaaacttata |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||| |||||| ||||||||| |
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| T |
12818959 |
aaatcacttcttctatggttgccttgaactcagctgcctatatattgtcacgaagcttttttcgtttgtcaaatttcgcaatgaaaaccataaacttata |
12818860 |
T |
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| Q |
662 |
tgtat------aatatggctgccttttctctaaaatcatttcttctct |
703 |
Q |
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| T |
12818859 |
tgtatgatatacatatggctgccttttctctaaaatcatttcttctct |
12818812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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