View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_12 (Length: 447)
Name: NF12740_low_12
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 60 - 437
Target Start/End: Original strand, 43531218 - 43531592
Alignment:
| Q |
60 |
tttaatacaaggtaagtttacttaggagacaagtaaagtctgatcaatgaataatattttatttaaatatcaaatttggatactatccaaataatttgat |
159 |
Q |
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| T |
43531218 |
tttaatacaaggtaagtttacttaggagacaagtaaagtctgatcaatgaata---ttttatttaaatatcaaatttggatactatcgaaataattcgat |
43531314 |
T |
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| Q |
160 |
cttagctgaaatgcattaaccacttacctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaa |
259 |
Q |
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| T |
43531315 |
cttagctgaaatgcattaaccacttacctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaa |
43531414 |
T |
|
| Q |
260 |
agaacttgtgtgattctcaaccagctaaaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctcccc |
359 |
Q |
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| T |
43531415 |
agaacttgtgtgattctcaaccagctaaaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctcccc |
43531514 |
T |
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| Q |
360 |
actgtcttttacgtgaacgaaccttagacttcacttcttcatcaagtggaattggaaccattagctttttcttctctg |
437 |
Q |
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| T |
43531515 |
attgtcttttacgtgaacgaaccttagacttcacttcttcatcaagtggaattggaaccattagctttttcttctctg |
43531592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 183 - 370
Target Start/End: Complemental strand, 24128357 - 24128170
Alignment:
| Q |
183 |
ttacctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaaagaacttgtgtgattctcaacca |
282 |
Q |
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| T |
24128357 |
ttacctgatcttgcagatcttttgggttcttagcatcggattgccaccagagtaatcctaagatgattgcagtggataaaacttgtgtgattcttaacca |
24128258 |
T |
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| Q |
283 |
gctaaaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctccccactgtctttta |
370 |
Q |
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| T |
24128257 |
gctaaaatagtcatgcctcctttccttgattcctctccaaaaaagtatggaaaattgttcatcccatcttgctccccattgtctttta |
24128170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 183 - 369
Target Start/End: Complemental strand, 24146122 - 24145936
Alignment:
| Q |
183 |
ttacctgatcttgaagaccctttgggttgctagcatctgattgccaccatagtaatccaaggatgacagcagtggaaagaacttgtgtgattctcaacca |
282 |
Q |
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| T |
24146122 |
ttacctgatcttgcagatcttttgggttttcagcatctgattgccaccagagtgatcctaagatgattgcagtggataaaacttgtgtgattcttaacca |
24146023 |
T |
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| Q |
283 |
gctaaaatagtcatgtctccgttctttgaatcctctggaaaacaatattaaaaattgttcaatccaacttgctccccactgtctttt |
369 |
Q |
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|||||| |||||||| ||| ||| |||| ||||||| |||| | ||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
24146022 |
gctaaagtagtcatgcttcctttccttgattcctctgcaaaaaagtatggaaaattgttcatcccaacttgctccccattgtctttt |
24145936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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