View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_14 (Length: 440)
Name: NF12740_low_14
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 25899636 - 25899212
Alignment:
| Q |
1 |
tgtttaattcaatgaaaaactgatggaactcacacaaaatgaagtaatggaacagtaaaagtatatgtatgaagtgaatggagagtatttaattaatgga |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899636 |
tgtttaattcaatgaaaaactgatgga-ctcacacaaaatgaagtaatggaacagtaaaagtatatgtatgaagtgaatggagagtatttaattaatgga |
25899538 |
T |
|
| Q |
101 |
aaagagattcagttacaaacatgaaccagagccaatgctcctcccagagaatgatttctcctattacaaatatatcaagactcatcctatctaatcacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
25899537 |
aaagagattcagttacaaacatgaaccagagccaatgctcctcccagagaatgatttctcctattacaaatatatcaacactcatcctgtctaatcacaa |
25899438 |
T |
|
| Q |
201 |
ccccccttcacattatattccccattctctaacaaacttcccagaagttcagggccacgtcactaactaaccacccccctctagattcttctttcctcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25899437 |
ccccccttcacattatattccccattctctaacaaacttccaagaagttcagggccacgtcactaactaaccaccctcctctagattcttctttcctcta |
25899338 |
T |
|
| Q |
301 |
cgggtatatactctccaaacagcaggtttgggcttctccctagcagtctcattttcataaggcccaattgttctatcaaaaacacaacacacaaagcatg |
400 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
25899337 |
cgggtatgtactctccaaacagcaggtttgggcttctccctagcagtctcattttcataaggctcaatacttctatcaaaaacacaacacacaaagcatg |
25899238 |
T |
|
| Q |
401 |
caaattatcctcataccccaaccagt |
426 |
Q |
| |
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|||| ||||||||||||||||||||| |
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|
| T |
25899237 |
caaactatcctcataccccaaccagt |
25899212 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 8815039 - 8815088
Alignment:
| Q |
274 |
cccccctctagattcttctttcctctacgggtatatactctccaaacagc |
323 |
Q |
| |
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||||||||||||||||||||||||||||| || || |||||||| ||||| |
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|
| T |
8815039 |
cccccctctagattcttctttcctctacgcgtctagactctccacacagc |
8815088 |
T |
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