View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_15 (Length: 436)
Name: NF12740_low_15
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 44263891 - 44263487
Alignment:
| Q |
19 |
ctgaaggaagatgtttacaggctgcagagtcagtgcaatgtcatgcaagcacagatggacaagatggctgagaagaagaaaagtttcttcaaatggaaga |
118 |
Q |
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| T |
44263891 |
ctgaaggaagatgtttacaggctgcagagtcagtgcaatgtcatgcaagcacagatggacaagatggctgagaagaagaaaagtttcttcaaatggaaga |
44263792 |
T |
|
| Q |
119 |
aacttgcttttagtaaaagcatcggagagatggagaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaacacctatggacatgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44263791 |
aacttgcttttagtaaaagcatcggagagatggagaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaacacctatggacatgaa |
44263692 |
T |
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| Q |
219 |
aactagtactgtggtcaaaagtaggactcctcataagtggagaaaatctatgtcctgatagagaggctttcaatgttaa-taacaaaatnnnnnnnttaa |
317 |
Q |
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| T |
44263691 |
aactagtactgtggtcaaaagtaggactcctcataagtggagaaaatctatgtcctgatagagaggctttcattgttaaataaaaaaataaaaaaattaa |
44263592 |
T |
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| Q |
318 |
ggtgtcatataagtgtttattggagttaagaatttggaaatgatgtaagatagagacatattttggaataaattcaataaagatgtgggggtacaacttg |
417 |
Q |
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| T |
44263591 |
ggtgtcatataagtgtttattggagataagaatttggaaatgatgtaagatagagacatattttggaataaattcaataaagatgtgggggtacaacttg |
44263492 |
T |
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| Q |
418 |
gactg |
422 |
Q |
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| T |
44263491 |
gactg |
44263487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 282 - 416
Target Start/End: Complemental strand, 44260823 - 44260686
Alignment:
| Q |
282 |
aggctttcaatgttaataacaaaatnnnnnnnttaaggtgtcatataagtgtttattggagtta---agaatttggaaatgatgtaagatagagacatat |
378 |
Q |
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||||||||| ||||||||||||||| ||||| ||| ||||| ||||||||||||||| ||| ||||||||| ||||||||||| ||| || |
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| T |
44260823 |
aggctttcattgttaataacaaaataaaaaa-ttaagttgttgtataactgtttattggagttataaagactttggaaataatgtaagatagtgacctac |
44260725 |
T |
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| Q |
379 |
tttggaataaattcaataaagatgtggggg-tacaactt |
416 |
Q |
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| T |
44260724 |
tttggaataacttcaataaagatgcgggggatacaactt |
44260686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 56165629 - 56165443
Alignment:
| Q |
19 |
ctgaaggaagatgtttacaggctgcagagtcagtgcaatgtcatgcaagcacagatggacaagatggctgagaagaagaaaagtttcttcaaatggaaga |
118 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
56165629 |
ctgaaggaagatgtttacaggctgcaaagtcagtgcaatgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaaga |
56165530 |
T |
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| Q |
119 |
aacttgcttttagtaaaagcat---cggagagatggagaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaa |
202 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
56165529 |
aacttgcttttagtaaaagcattggtggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaa |
56165443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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