View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12740_low_18 (Length: 399)
Name: NF12740_low_18
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 31952536 - 31952747
Alignment:
| Q |
1 |
gagtaaaggcgctgcaaatcgtccggcgtgtttagtacctcgttgagtctgacttggttccatgctacctctattccaagtacttcatcaattgctttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31952536 |
gagtaaaggcgctgcaaatcgtccggcgtgtttagtacctcgttgagtctgacttggttccatgctacctctattccaagtacttcatcaattgctttgt |
31952635 |
T |
|
| Q |
101 |
atactgtcttcattgccccttttccaagaacatctccaaactaaccaatcacacagaac--acaatatttgtcacattaattctatcatatgagacagtt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||| ||| |
|
|
| T |
31952636 |
atactgtcttcattgccccttttccaagaacatctccaaactaatcaatcacacagaacatacaatatttgtcacattaattccattatatgagacggtt |
31952735 |
T |
|
| Q |
199 |
tctttcaatcat |
210 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31952736 |
tctttcaatcat |
31952747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 205 - 385
Target Start/End: Original strand, 31952826 - 31953006
Alignment:
| Q |
205 |
aatcatggttttaaacaaacggtaagcgatcagtatcacggcataaagtttttgatgtctctgcaaccgctgttaagacggtcatgttagtatcattcga |
304 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
31952826 |
aatcatggttttaaacaaacggcatgcgatcagtatcacaatataaagtttttgatgtctctgcaaccgttgttaagacggtcacattagtatcattcga |
31952925 |
T |
|
| Q |
305 |
ctgctctctataatatcaaagatcgcgacacggtccaatttaaaattatcttaataaacctaataaccatatagcaaattg |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31952926 |
ctgctctctataatatcaaagatcgcgacacggtccaatttaaaattatcttaataaacctaataaccatatagcaaattg |
31953006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 139
Target Start/End: Original strand, 5952266 - 5952362
Alignment:
| Q |
43 |
ttgagtctgacttggttccatgctacctctattccaagtacttcatcaattgctttgtatactgtcttcattgccccttttccaagaacatctccaa |
139 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| || | |||||| ||||| || ||| | |||||||||||||||||||||| | |||||| |
|
|
| T |
5952266 |
ttgagtttgacttggttccatgctatttctattccaaggaccttatcaatggctttatacactattttcattgccccttttccaagaatacctccaa |
5952362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 22397339 - 22397380
Alignment:
| Q |
38 |
cctcgttgagtctgacttggttccatgctacctctattccaa |
79 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22397339 |
cctcattgagtttgacttggttccatgctacctctattccaa |
22397380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University