View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_19 (Length: 379)
Name: NF12740_low_19
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 2653098 - 2653416
Alignment:
| Q |
20 |
tcttcaaaactccaaagattcattgaagtaattattaacctcccattcacatgattcaaaatcctcctcaagatgaaaaggaatagtatcaacaatgcaa |
119 |
Q |
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| T |
2653098 |
tcttcaaaactccaaagattcattgaagtaattattaacctcccattcacatgattcaaaatcctcctcaagatgaaaaggaatagtatcaacaatgcaa |
2653197 |
T |
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| Q |
120 |
tcactctcattagaaaccattgtaggaataacaggttcataataagagcaagaaccatatgattcatcaacaaatgtaaaaccatcatccaaatattcct |
219 |
Q |
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| T |
2653198 |
tcactctcattagaaaccattgtaggaagaacaggttcataataagaacaagaaccatatgattcatcaacaaatgtaaaaccatcatccaaatattcct |
2653297 |
T |
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| Q |
220 |
ctccagttatctcttttatccattcttgatcattcatcctttcactccaaatttcactcacagattcttgagaataagatgaactaccattacaatcctc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2653298 |
ctccagttatctcttttatccattcttgatcattcatcctttcactccaaatttcactcacagattcttgagaataagatgaactaccattacaatcctc |
2653397 |
T |
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| Q |
320 |
aacagaaacattatcacca |
338 |
Q |
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|||||| |||||||||||| |
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| T |
2653398 |
aacagacacattatcacca |
2653416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 2653442 - 2653471
Alignment:
| Q |
340 |
attcatctttcactgatcttttcttctgtg |
369 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2653442 |
attcatctttcactgatcttttcttctgtg |
2653471 |
T |
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