View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_low_22 (Length: 353)

Name: NF12740_low_22
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_low_22
NF12740_low_22
[»] chr6 (2 HSPs)
chr6 (16-334)||(34518625-34518942)
chr6 (112-177)||(3508666-3508732)
[»] chr8 (4 HSPs)
chr8 (16-326)||(44667595-44667912)
chr8 (130-334)||(6816782-6816994)
chr8 (82-180)||(5538195-5538302)
chr8 (38-101)||(6817192-6817255)
[»] chr2 (2 HSPs)
chr2 (16-334)||(2037884-2038191)
chr2 (16-118)||(29963893-29963995)
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-208)||(188907-189112)
[»] chr4 (3 HSPs)
chr4 (206-334)||(28657518-28657659)
chr4 (130-191)||(28657267-28657327)
chr4 (38-83)||(28655466-28655511)
[»] chr7 (4 HSPs)
chr7 (207-272)||(28382751-28382816)
chr7 (207-329)||(28387039-28387170)
chr7 (112-178)||(16420465-16420532)
chr7 (271-330)||(28382540-28382599)
[»] scaffold0003 (1 HSPs)
scaffold0003 (112-178)||(9177-9244)
[»] chr5 (1 HSPs)
chr5 (138-193)||(37940308-37940364)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 34518625 - 34518942
Alignment:
Q  16 atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcagaccccctttcccggtctctctc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  34518625 atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatatttgttttctctccttcctccttcagacccc-tttcccagtctctctc 34518723  T
Q  116 tctatgtattttgattttattcttcaaagtatagaatgtgtatgtgtgaaaaagaataggaactgttattataataactctttcactcactaacttcctt 215  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  34518724 tctatgtattttgattttgttcttcaaagtatagaatgggtatgtgtgaaaaagaataggaaccgttattataataactctttcactcgctaacttcctt 34518823  T
Q  216 gctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatatgaaagttgtatctcctactttctagtaatgaataaacatgatcgtg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34518824 gctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatatgaaagttgtatctcctactttctagtaatgaataaatatgatcgtg 34518923  T
Q  316 tgcttcttaactagtaact 334  Q
    |||||| ||||||||||||    
T  34518924 tgcttcctaactagtaact 34518942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 3508732 - 3508666
Alignment:
Q  112 tctctctatgtattttgattttattcttcaaagtatag-aatgtgtatgtgtgaaaaagaataggaa 177  Q
    |||| |||||||||||| |||| ||||||||||||||| || | || ||||||||||||| ||||||    
T  3508732 tctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaaaaagagtaggaa 3508666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 44667912 - 44667595
Alignment:
Q  16 atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcagaccccctttcccggtctc-tct 114  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |||    
T  44667912 atgaagagtaataatgataataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcagaacccttttcccgttctcttct 44667813  T
Q  115 ctctatgtattttgattttattcttcaaagtatagaatgtgtatgtgtgaaaaagaataggaa-ctgttattataataactctttcactcactaacttcc 213  Q
     ||||||| ||||| |||| |||||||||| |||||||| || |||||||||| ||||||||| | |||||| ||||||||||    | ||||||||  |    
T  44667812 ttctatgtcttttgtttttgttcttcaaagcatagaatgagtgtgtgtgaaaatgaataggaaccggttattctaataactct----cccactaactctc 44667717  T
Q  214 ttgctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatatga---------aagttgtatctcctactttctagtaatgaataa 304  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||| |    
T  44667716 ttcctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatataaacagggaagaagttgtatctcctactttctagtaatgaatga 44667617  T
Q  305 acatgatcgtgtgcttcttaac 326  Q
    | ||||  ||||||||| ||||    
T  44667616 aaatgagtgtgtgcttcctaac 44667595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 130 - 334
Target Start/End: Complemental strand, 6816994 - 6816782
Alignment:
Q  130 ttttattcttcaaagtatagaatgtgtatgtgtgaaaaagaataggaactg-ttattataataactctttcactcactaacttccttgctaaaaatgtgg 228  Q
    |||| ||||||||||||||||||| || ||||| |||||||||| |||| | ||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  6816994 ttttgttcttcaaagtatagaatgggtgtgtgttaaaaagaataagaaccggttattattataactctctcactcactaccttccttgctaaaaatgtgg 6816895  T
Q  229 aactaaatcatggagtggaaagtggtgtgtcatggtcatatga-------aagttgtatctcctactttctagtaatgaataaacatgatcgtgtgcttc 321  Q
    |||||| ||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||| ||||||||    
T  6816894 aactaattcatggagtggaaagtggtgtgtcatggtcatatgaaccgaagaaattgtatctcctactttctagtaatgaataaacatgatcatgtgcttc 6816795  T
Q  322 ttaactagtaact 334  Q
     ||||||||||||    
T  6816794 ctaactagtaact 6816782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 5538195 - 5538302
Alignment:
Q  82 ttcctccttcagaccccctttcccggtctctctctct--------atgtattttgattttattcttcaaagtatag-aatgtgtatgtgtgaaaaagaat 172  Q
    |||||||||||||| |||||||||| ||||| |||||        |||||||||| |||| ||||||||||||||| || | || |||||||||| ||||    
T  5538195 ttcctccttcagactccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaaaaggaat 5538294  T
Q  173 aggaactg 180  Q
    ||||||||    
T  5538295 aggaactg 5538302  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 6817255 - 6817192
Alignment:
Q  38 ggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcagaccccctt 101  Q
    ||||| ||||||||||| |||||||||||||||| |  ||||||||| |||||| ||| |||||    
T  6817255 ggatttttacttgtctctctagagtgaatgtttgatcactctccttcttccttctgactccctt 6817192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 2038191 - 2037884
Alignment:
Q  16 atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcagaccccctttcccggtctctctc 115  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||             | |||||    ||| |||     
T  2038191 atgaatagtgatagtgatgataggattcttacttgtctccctagagtgaatgtttgttttctctcctt-------------ctctttc----tctttctt 2038109  T
Q  116 tctatgtattttgattttatt-----cttcaaagtatagaatgtgtatgtgtgaaaaagaataggaactgttattataataactctttcactcactaact 210  Q
     |||||||||||| |||| ||     ||||||||||||||||| ||||||||||||| |||||||||| |       ||||||||| |||||||||||||    
T  2038108 cctatgtattttgtttttgttttgttcttcaaagtatagaatgggtatgtgtgaaaa-gaataggaaccg-------aataactctctcactcactaact 2038017  T
Q  211 tccttgctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatatga---------aagttgtatctcctactttctagtaatgaa 301  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||         |||||||||||  |||||||||||||| ||    
T  2038016 tccttgctaaaaatgtggaactaaatcatggggtggaaagtggtgtgtcatgatcatatgaacatggaagaagttgtatcttatactttctagtaataaa 2037917  T
Q  302 taaacatgatcgtgtgcttcttaactagtaact 334  Q
    |||||||||||||||||||| ||||||||||||    
T  2037916 taaacatgatcgtgtgcttcctaactagtaact 2037884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 29963893 - 29963995
Alignment:
Q  16 atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcagaccccctttcccggtctctctc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  29963893 atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcagaccccctttcccgttctctttc 29963992  T
Q  116 tct 118  Q
    |||    
T  29963993 tct 29963995  T

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Target: scaffold0004 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 188907 - 189112
Alignment:
Q  16 atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcagaccccctttcccg--------g 107  Q
    ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||             
T  188907 atgaagatttataatgatgataggattcttacttgtctccctaaagtgaatgtttgttttctctccttcctcctttagaccccctttcccgttccctttc 189006  T
Q  108 tctctctctctatgtattttg-----attttattcttcaaagtatagaatgtgtatgtgtgaaaaagaataggaactgttattataataactctttcact 202  Q
    ||| |||| ||||||||||||      |||| ||||||||||||||||||| |||||||||||||| |||||||||  |||||||||||||||| |||||    
T  189007 tctttctccctatgtattttgtttttgttttgttcttcaaagtatagaatgggtatgtgtgaaaaacaataggaaccattattataataactctctcact 189106  T
Q  203 cactaa 208  Q
    ||||||    
T  189107 cactaa 189112  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 334
Target Start/End: Original strand, 28657518 - 28657659
Alignment:
Q  206 taacttccttgctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatatga---------aagttgtatctcctactttctagt- 295  Q
    ||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||         ||| ||||||||||||||||||||     
T  28657518 taacttctttcctaaaaaagtggaactaaatcatggagtggaaagtggtgtgtcgtggtcatatgaataaggaagaagctgtatctcctactttctagta 28657617  T
Q  296 ---aatgaataaacatgatcgtgtgcttcttaactagtaact 334  Q
       ||||||| | ||||| ||||| |||| ||||||||||||    
T  28657618 gtgaatgaatgatcatgaccgtgttcttcctaactagtaact 28657659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 28657267 - 28657327
Alignment:
Q  130 ttttattcttcaaagtatagaatgtgtatgtgtgaaaaagaataggaa-ctgttattataata 191  Q
    |||| ||||||||||||||||||| ||  ||||||||||||||||||| | ||||||||||||    
T  28657267 ttttgttcttcaaagtatagaatgggt--gtgtgaaaaagaataggaaccggttattataata 28657327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 28655466 - 28655511
Alignment:
Q  38 ggattcttacttgtctccctagagtgaatgtttgttttctctcctt 83  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||    
T  28655466 ggattcttacttgtctttctagagtgaatgtttgatctctctcctt 28655511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 28382816 - 28382751
Alignment:
Q  207 aacttccttgctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatatgaa 272  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  28382816 aacttccttcctaaaatagtggaactaaatcatggagtggaaagtggtgtgtcacggtcatatgaa 28382751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 329
Target Start/End: Complemental strand, 28387170 - 28387039
Alignment:
Q  207 aacttccttgctaaaaatgtggaactaaatcatggagtggaaagtggtgtgtcatggtcatatga---------aagttgtatctcctactttctagtaa 297  Q
    ||||||||| ||||||   ||||||||||||||||||||||||||| ||||||| ||||||||||         ||||||||||| |||||||||||||     
T  28387170 aacttccttcctaaaataatggaactaaatcatggagtggaaagtgatgtgtcacggtcatatgaataaggaagaagttgtatctactactttctagtat 28387071  T
Q  298 tgaataaacatgatcgtgtgcttcttaactag 329  Q
     |||| ||||||| |||||||||  |||||||    
T  28387070 ggaatgaacatgaacgtgtgctttctaactag 28387039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 16420532 - 16420465
Alignment:
Q  112 tctctctatgtattttgattttattcttcaaagtatag-aatgtgtatgtgtgaaaaagaataggaac 178  Q
    |||| |||||||||||| |||| ||||||||||||||| || | || |||||||||||||||||||||    
T  16420532 tctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaaaaagaataggaac 16420465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 28382599 - 28382540
Alignment:
Q  271 aaagttgtatctcctactttctagtaatgaataaacatgatcgtgtgcttcttaactagt 330  Q
    ||||||||||||||||||||||| || ||||  ||||||| |||||||||  ||||||||    
T  28382599 aaagttgtatctcctactttctaatattgaaggaacatgaacgtgtgctttctaactagt 28382540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 9244 - 9177
Alignment:
Q  112 tctctctatgtattttgattttattcttcaaagtatag-aatgtgtatgtgtgaaaaagaataggaac 178  Q
    |||| |||||||||||| |||| ||||||||||||||| || | || |||||||||||||||||||||    
T  9244 tctcactatgtattttgtttttgttcttcaaagtatagaaaggggtgtgtgtgaaaaagaataggaac 9177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 37940308 - 37940364
Alignment:
Q  138 ttcaaagtatagaatgtgtatgtgtgaaaaagaataggaa-ctgttattataataac 193  Q
    |||||||||||||||| || || ||||||||||||||||| | ||||||||||||||    
T  37940308 ttcaaagtatagaatgggtgtgggtgaaaaagaataggaaccggttattataataac 37940364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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