View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12740_low_23 (Length: 350)
Name: NF12740_low_23
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_23 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 32167455 - 32167186
Alignment:
| Q |
15 |
atgaagcatgcttgaatgaaagaatgaggtaaaggacgactttggaagagaatcacattttgaagagcaagttgctttgtgaactgtgtatactatgtgt |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32167455 |
atgaagcatgcttgaatgaaagaaagaggtaaaggacgactttggaagagaatcacattttgaagagcaagttgctttgtgaactgtgtatactatgtgt |
32167356 |
T |
|
| Q |
115 |
gtttattagttgctcctggtttgtgggcaaatcccatgatgtttgtttgttgacagtttagttttacctttctcatccttttttgtattaggcagccgga |
214 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32167355 |
gtttattagctgctcctggtttgtggg-aaatcccatgatgtttgtttgttgacagtttagttttacctttctcatccttttttgtattaggcagccgga |
32167257 |
T |
|
| Q |
215 |
cctgggttggatgaaaagattgcaacaaatacttggtcggaagcatcagcgcaatttgcatgtatgtacta |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32167256 |
cctgggttggatgaaaagattgcaacaaatacttggtcggaagcatcagcgcaatttgcatgtatgtacta |
32167186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 27372618 - 27372656
Alignment:
| Q |
309 |
gaagaagttaaattaacaccttcaaattggcatcagaga |
347 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
27372618 |
gaagaagctaaattaaccccttcaaattggcatcagaga |
27372656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 19139126 - 19139067
Alignment:
| Q |
219 |
ggttggatgaaaagattgcaacaaatacttggtcggaagcatcagcgcaatttgcatgta |
278 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||| |||| ||| |||||||| |
|
|
| T |
19139126 |
ggttggatgaaaaggttacaacaaatacttggacggaagcaccagcataatctgcatgta |
19139067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 26673328 - 26673288
Alignment:
| Q |
310 |
aagaagttaaattaacaccttcaaattggcatcagagagaa |
350 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
26673328 |
aagaagttaaattaacccactcaaattggcatcagagagaa |
26673288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University