View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12740_low_24 (Length: 347)
Name: NF12740_low_24
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 29135124 - 29134810
Alignment:
| Q |
15 |
cagagaagacatggtttgaccaatgatagttgaaagcgggaacaaaggcgtgaaactaggtgtggttgtttggctaaatttcgtgttcacatcgacttaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
29135124 |
cagagaagacatggtttgaccaatgatagttgaaagcgggaacaaaggcgtgaaagtaggtgtggttgtctggctaaatttcgtgttcgcatcgacttaa |
29135025 |
T |
|
| Q |
115 |
gatcagggaggtggtatgtgacccttttcagcgacgagcataatcacatattgttggaagagaagtattgtttgttgttactaggacacagaaaaatcag |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29135024 |
gatcagggagttggtatgtgacccttttcagcgacgagcataatcacatattgttggaagagaagtattgtttgttgttactaggacacagaaaaatcag |
29134925 |
T |
|
| Q |
215 |
tgaagaagatatctcgaattaatagtttcagaaaaagtgggattaggtcttgtcaaatgtatggtgcatttgcaaacaactcaggcgggtatgaaaaggt |
314 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29134924 |
agaagaagatatctcaaattaatagtttcagaaaaagtgggattaggccttgtcaaatgtatggtgcatttgcaaacaactcaggctggtatgaaaaggt |
29134825 |
T |
|
| Q |
315 |
aggtttagaagaaat |
329 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
29134824 |
aggtttagaagaaat |
29134810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University