View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_low_25 (Length: 341)

Name: NF12740_low_25
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_low_25
NF12740_low_25
[»] chr4 (8 HSPs)
chr4 (12-328)||(18727842-18728159)
chr4 (12-328)||(18720406-18720723)
chr4 (12-328)||(18651823-18652135)
chr4 (12-328)||(18675876-18676193)
chr4 (12-241)||(18686004-18686233)
chr4 (46-241)||(18693531-18693729)
chr4 (44-130)||(18076774-18076860)
chr4 (12-52)||(18695999-18696039)
[»] chr6 (20 HSPs)
chr6 (14-233)||(27657104-27657321)
chr6 (14-148)||(28782724-28782855)
chr6 (30-149)||(27607613-27607732)
chr6 (12-194)||(28789925-28790096)
chr6 (12-103)||(26659534-26659625)
chr6 (12-103)||(26765505-26765596)
chr6 (13-148)||(26638982-26639116)
chr6 (13-148)||(26744948-26745082)
chr6 (14-94)||(27600863-27600943)
chr6 (51-167)||(26953282-26953394)
chr6 (38-100)||(26659623-26659685)
chr6 (38-100)||(26765594-26765656)
chr6 (44-130)||(27424695-27424781)
chr6 (15-136)||(26650118-26650238)
chr6 (15-136)||(26756086-26756206)
chr6 (12-97)||(27600677-27600765)
chr6 (51-149)||(26626820-26626914)
chr6 (51-149)||(26732797-26732891)
chr6 (258-307)||(27657014-27657063)
chr6 (12-55)||(28782551-28782594)
[»] scaffold0419 (1 HSPs)
scaffold0419 (12-148)||(11069-11202)
[»] scaffold0277 (2 HSPs)
scaffold0277 (14-194)||(970-1141)
scaffold0277 (12-194)||(10103-10274)
[»] scaffold0003 (1 HSPs)
scaffold0003 (44-130)||(62582-62668)
[»] chr1 (1 HSPs)
chr1 (51-111)||(26139691-26139751)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 18728159 - 18727842
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  18728159 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaaaagaaaaggaacaccatggatagat 18728060  T
Q  112 atattccttggtccaggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataa 211  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18728059 atattccttggtccaggtacatcattatcattattatctttataaatcaattaattgtttctacctggaagagtttttcaaatgacgagacatgatataa 18727960  T
Q  212 gattctgtcgaaaatgctttgtagacacacacttcttatctaaggcatccaataccgacacatgtgattttcgcaaattactattggtgttgac-aatca 310  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |||||    
T  18727959 gattctgtccaaaatgctttgtagacacacacttctgatcgaaggcatccaataccaacacaggtgattttctcaaattactattggtgttgacaaatca 18727860  T
Q  311 atgtcgagtctgatgtcc 328  Q
    ||||||||| || |||||    
T  18727859 atgtcgagtttggtgtcc 18727842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 18720723 - 18720406
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    ||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18720723 cagagacagaaattttgcagcagcaacatctagttttattgccaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 18720624  T
Q  112 atattccttggtccaggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataa 211  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||    
T  18720623 atattccttggtccaggtacatcattatcattattatcttaataaatcaattaattgcttctacctagaagagtttttcaaatgatgagacatgatataa 18720524  T
Q  212 gattctgtcgaaaatgctttgtagacacacacttcttatctaaggcatccaataccgacacatgtgattttcgcaaattactattggtgttgac-aatca 310  Q
    ||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||| |||||||| ||| |||||||| |||||    
T  18720523 gattctgtcgataatgctttgtagacacacacttcagatcgaaggcatccaataccgacatatgtgattttctcaaattaccattagtgttgacaaatca 18720424  T
Q  311 atgtcgagtctgatgtcc 328  Q
     ||||||||||| |||||    
T  18720423 gtgtcgagtctggtgtcc 18720406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 18652135 - 18651823
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18652135 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 18652036  T
Q  112 atattccttggtccaggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataa 211  Q
    |||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||| | |||||||||| |||    
T  18652035 atattccttggtccaggtacatcattgtcattattatctttataaaccaattaattgtctctacctgaaagagtttttcaaatgatgagacatgatttaa 18651936  T
Q  212 gattctgtcgaaaatgctttgtagacacacacttcttatctaaggcatccaataccgacacatgtgattttcgcaaattactattggtgttgac-aatca 310  Q
    |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||     |  |||||||||||||| |||||    
T  18651935 gattctgtcgaaaatgctttgtagacacacacttctgatccagggcatccaataccgacacatgtgattttc-----tcgctattggtgttgacaaatca 18651841  T
Q  311 atgtcgagtctgatgtcc 328  Q
     ||||||||||| |||||    
T  18651840 gtgtcgagtctggtgtcc 18651823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 18676193 - 18675876
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18676193 cagagacagaaattttgcagcagcaacatctagttttattgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 18676094  T
Q  112 atattccttggtccaggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataa 211  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||| ||||||||||| |||||||| |||||||||||||||| | ||||||||||||||    
T  18676093 atatttcttggtccaggtacatcattatcattattatcttaataactcaattaattgcttctacctagaagagtttttcaaatgatgagacatgatataa 18675994  T
Q  212 gattctgtcgaaaatgctttgtagacacacacttcttatctaaggcatccaataccgacacatgtgattttcgcaaattactattggtgttgac-aatca 310  Q
    ||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||| |||||||| ||| |||||||| |||||    
T  18675993 gattctgtcgataatgctttgtagacacacacttcagatcgaaggcatccaataccgacatatgtgattttctcaaattaccattagtgttgacaaatca 18675894  T
Q  311 atgtcgagtctgatgtcc 328  Q
     ||||||||||| |||||    
T  18675893 gtgtcgagtctggtgtcc 18675876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 18686233 - 18686004
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  18686233 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttaatgaaacaatagaaaaggaacaccatggatagat 18686134  T
Q  112 atattccttggtccaggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataa 211  Q
    |||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  18686133 atattccttgatccaggtacatcattatcattattatctttataaaccaattaattgtttctatctggaagagtttttcaaatgacgagacatgatataa 18686034  T
Q  212 gattctgtcgaaaatgctttgtagacacac 241  Q
    ||||||||||||||||||||||||||||||    
T  18686033 gattctgtcgaaaatgctttgtagacacac 18686004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 46 - 241
Target Start/End: Complemental strand, 18693729 - 18693531
Alignment:
Q  46 tttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcatcat 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18693729 tttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcattat 18693630  T
Q  146 t---atctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataagattctgtcgaaaatgctttgtagacacac 241  Q
    |   ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18693629 tatcatctttataaaccaattaattgtttctacctggaagagtttttcaaatgacgagacatgatataagattctgtcgaaaatgctttgtagacacac 18693531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 18076774 - 18076860
Alignment:
Q  44 gctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggta 130  Q
    |||||||||||||||||||  ||||| |||||||||||||||| |||||||||||||| | | |||||| ||||| ||||| |||||    
T  18076774 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacaccgttgatagatagattccatggtcaaggta 18076860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 18696039 - 18695999
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtg 52  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  18696039 cagagagagaaattttgcagcagcaacatctagctttagtg 18695999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 27657321 - 27657104
Alignment:
Q  14 gagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatat 113  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||| ||||||||  ||| ||||||||||||||||||||     
T  27657321 gagacagaaattttgcagcaacaacatctagctttagtgtcagtcatgcagaacttggttcttaatgaaacaa--gaataggaacaccatggctagatag 27657224  T
Q  114 attccttggtccaggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaataacgagacatgatataaga 213  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||| |||||| | ||||||| || |||||    
T  27657223 attccttggtccaggtacatcattatcattattatctttataaatcaattaattatttctaccttgaatagtttatcaaatgatgagacattatgtaaga 27657124  T
Q  214 ttctgtcgaaaatgctttgt 233  Q
    | |||| ||  |||||||||    
T  27657123 tactgtggaggatgctttgt 27657104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 28782724 - 28782855
Alignment:
Q  14 gagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatat 113  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||   |  ||||||| | | ||||||||     
T  28782724 gagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa---atgaggaacatctttgctagatag 28782820  T
Q  114 attccttggtccaggtacatcattatcatcattat 148  Q
    ||||||| ||||||||||||||||||||| |||||    
T  28782821 attcctttgtccaggtacatcattatcattattat 28782855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 27607732 - 27607613
Alignment:
Q  30 agcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggt 129  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||||  ||||||||||||||||||  |||||||| |||||||    
T  27607732 agcaacaacatctagctttagtgtcagccatgcggaacttggttcttaatgaaacaaaagaattggaacaccatggctagattgattccttgctccaggt 27607633  T
Q  130 acatcattatcatcattatc 149  Q
    ||||||||||||| ||||||    
T  27607632 acatcattatcattattatc 27607613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 28789925 - 28790096
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||||||||  |||||||| |||||||||||||   || |||  |||||| |||||||    
T  28789925 cagagacagaaatttggcagcagcaacatctatctttagagtcaggcatgcaaaacttggttcttactgaaacaa---aagagg--caccattgctagat 28790019  T
Q  112 atattccttggtccaggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaat 194  Q
    | ||||||| ||||||||||||||||||||| |      |||||||  ||||||||||||||||||| |  ||||||||||||    
T  28790020 agattccttcgtccaggtacatcattatcatta------ttataaactaattaattgtttctacctgcataagtttttcaaat 28790096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 26659534 - 26659625
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccat 103  Q
    |||||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  26659534 cagagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 26659625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 26765505 - 26765596
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccat 103  Q
    |||||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  26765505 cagagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 26765596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 26638982 - 26639116
Alignment:
Q  13 agagacagaaattttgcagcagcaacatctag---ctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctag 109  Q
    ||||| ||||||||| ||||||||||||||||   ||||| ||||||||||||||||| ||||||| |||||||||| | ||||| ||||||| |||       
T  26638982 agagatagaaatttttcagcagcaacatctagaagctttactgtcaggcatgcggaacatggtgctaactgaaacaaaataaaagtaacaccaaggc--- 26639078  T
Q  110 atatattccttggtccaggtacatcattatcatcattat 148  Q
     || |||||||||||||||||||| |||||||| |||||    
T  26639079 -taaattccttggtccaggtacattattatcataattat 26639116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 26744948 - 26745082
Alignment:
Q  13 agagacagaaattttgcagcagcaacatctag---ctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctag 109  Q
    ||||| ||||||||| ||||||||||||||||   ||||| ||||||||||||||||| ||||||| |||||||||| | ||||| ||||||| |||       
T  26744948 agagatagaaatttttcagcagcaacatctagaagctttactgtcaggcatgcggaacatggtgctaactgaaacaaaataaaagtaacaccaaggc--- 26745044  T
Q  110 atatattccttggtccaggtacatcattatcatcattat 148  Q
     || |||||||||||||||||||| |||||||| |||||    
T  26745045 -taaattccttggtccaggtacattattatcataattat 26745082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 27600943 - 27600863
Alignment:
Q  14 gagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaag 94  Q
    |||||||||| ||||||||||||  |||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  27600943 gagacagaaagtttgcagcagcagtatctagctgtagtgtccggcatgcggaacttggtgcttactgaaacaaaagaaaag 27600863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 26953282 - 26953394
Alignment:
Q  51 tgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcatcattatct 150  Q
    ||||||||||| |||  ||| ||||||||||||||| ||||||||||||| ||| ||||    ||||||| ||| | ||||||||||||||| |||| ||    
T  26953282 tgtcaggcatgtggagtttgatgcttactgaaacaaaagaaaaggaacacaatgactag----attccttagtcaaagtacatcattatcattattaact 26953377  T
Q  151 ttataaatcaattaatt 167  Q
    ||||||| |||||||||    
T  26953378 ttataaaccaattaatt 26953394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 26659623 - 26659685
Alignment:
Q  38 catctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacac 100  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||    
T  26659623 catctagctttagtgtcaggcatgcacaacttggtgcttattgaaacaaaagaaaaggaacac 26659685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 26765594 - 26765656
Alignment:
Q  38 catctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacac 100  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||| |||||||||||||    
T  26765594 catctagctttagtgtcaggcatgcacaacttggtgcttattgaaacaaaagaaaaggaacac 26765656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 27424781 - 27424695
Alignment:
Q  44 gctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggta 130  Q
    |||||||||||||||||||  ||||| |||||||||||||||| |||||||||||||| | | |||||| ||||| ||||| |||||    
T  27424781 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacaccgttgatagatagattccatggtcaaggta 27424695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 26650118 - 26650238
Alignment:
Q  15 agacagaaattttgcagcagcaacatctag---ctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    ||||||||||||||||||||||  ||||||   |||||||||||| ||||||| | ||||| || |||||||||| | |||||||||| |||||||||      
T  26650118 agacagaaattttgcagcagcataatctagtagctttagtgtcagacatgcgggatttggtcctcactgaaacaaaacaaaaggaacatcatggctag-- 26650215  T
Q  112 atattccttggtccaggtacatcat 136  Q
       |||||||||| |||||||||||    
T  26650216 --tttccttggtcaaggtacatcat 26650238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 26756086 - 26756206
Alignment:
Q  15 agacagaaattttgcagcagcaacatctag---ctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    ||||||||||||||||||||||  ||||||   |||||||||||| ||||||| | ||||| || |||||||||| | |||||||||| |||||||||      
T  26756086 agacagaaattttgcagcagcataatctagtagctttagtgtcagacatgcgggatttggtcctcactgaaacaaaacaaaaggaacatcatggctag-- 26756183  T
Q  112 atattccttggtccaggtacatcat 136  Q
       |||||||||| |||||||||||    
T  26756184 --tttccttggtcaaggtacatcat 26756206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 27600765 - 27600677
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtg---tcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaa 97  Q
    |||||||||||| ||||||||||||| ||||||||||| ||   |||||||||| |||| |||||||||| || | || ||||||||||    
T  27600765 cagagacagaaagtttgcagcagcaagatctagctttattgtcatcaggcatgcagaacatggtgcttacagacaaaaaagaaaaggaa 27600677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 26626820 - 26626914
Alignment:
Q  51 tgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcatcattatc 149  Q
    ||||||||||| |||| |||||||| | |||||||| |||||||||||| |||| || |    ||||||| ||| ||||||||||||||| | ||||||    
T  26626820 tgtcaggcatgtggaatttggtgctgaatgaaacaaaagaaaaggaacaacatgactgg----attccttagtcaaggtacatcattatcgttattatc 26626914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 26732797 - 26732891
Alignment:
Q  51 tgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggtacatcattatcatcattatc 149  Q
    ||||||||||| |||| |||||||| | |||||||| |||||||||||| |||| || |    ||||||| ||| ||||||||||||||| | ||||||    
T  26732797 tgtcaggcatgtggaatttggtgctgaatgaaacaaaagaaaaggaacaacatgactgg----attccttagtcaaggtacatcattatcgttattatc 26732891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 27657063 - 27657014
Alignment:
Q  258 atccaataccgacacatgtgattttcgcaaattactattggtgttgacaa 307  Q
    ||||||||| ||||||| ||||||||  ||||||||||||||||||||||    
T  27657063 atccaatactgacacatctgattttcttaaattactattggtgttgacaa 27657014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 28782551 - 28782594
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtca 55  Q
    ||||||||||||||| |||||||||||||||||| ||| |||||    
T  28782551 cagagacagaaatttggcagcagcaacatctagcattattgtca 28782594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 11069 - 11202
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||   || ||||||||||| |||||||    
T  11069 cagagacagaaatttggcagcagcaatatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa---aagaggaacaccattgctagat 11165  T
Q  112 atattccttggtccaggtacatcattatcatcattat 148  Q
    | ||||||| ||||||||||||||||||||| |||||    
T  11166 agattccttcgtccaggtacatcattatcattattat 11202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 1141 - 970
Alignment:
Q  14 gagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatat 113  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||   |  ||||||| | | ||||||||     
T  1141 gagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaa---atgaggaacatctttgctagatag 1045  T
Q  114 attccttggtccaggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaat 194  Q
    ||||||| ||||||||||||||||||||| |      |||||||  ||||||||||||||||||| |  ||||||||||||    
T  1044 attccttcgtccaggtacatcattatcatta------ttataaactaattaattgtttctacctgcataagtttttcaaat 970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 10274 - 10103
Alignment:
Q  12 cagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    ||||||||||||||| |||||||||||||||| |||||| |||||||||||  |||||||| |||||||||||||   || |||  |||||| |||||||    
T  10274 cagagacagaaatttggcagcagcaacatctatctttagagtcaggcatgcaaaacttggttcttactgaaacaa---aagagg--caccattgctagat 10180  T
Q  112 atattccttggtccaggtacatcattatcatcattatctttataaatcaattaattgtttctacctggaagagtttttcaaat 194  Q
    | ||||||| ||||||||||||||||||||| |      |||||||  ||||||||||||||||||| |  ||||||||||||    
T  10179 agattccttcgtccaggtacatcattatcatta------ttataaactaattaattgtttctacctgcataagtttttcaaat 10103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 62582 - 62668
Alignment:
Q  44 gctttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagatatattccttggtccaggta 130  Q
    |||||||||||||||||||  ||||| |||||||||||||||| |||||||||||||| | | |||||| ||||| ||||| |||||    
T  62582 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacaccgttgatagatagattccatggtcaaggta 62668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 26139691 - 26139751
Alignment:
Q  51 tgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccatggctagat 111  Q
    ||||| ||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||    
T  26139691 tgtcacgcatgtggaacttggtgcttaatgaaacaaaagaaaaggaacaccaaggctagat 26139751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University