View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_27 (Length: 336)
Name: NF12740_low_27
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_27 |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 27648296 - 27648604
Alignment:
| Q |
25 |
cacgaatcaaggatcaagcagtatattttggggtaaattagacctaatgtactaaaatagacatgaataacatgcataa-gtttgaaaaatttatgtcat |
123 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||| |||| |||| | | | | ||| | ||| |||| ||||||||||| ||| |
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| T |
27648296 |
cacgaatcaaggatcaagtagtaaattttggggtaaattagacctagtgtattaaagagcaaaactagagcat-cttaatgtttaaaaaatttatggcat |
27648394 |
T |
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| Q |
124 |
tttgacattgaattgactatatattatac----ttacattgccattacaaagttctgccaaagatgcatccaagggaccagatatcaatcatcttgtcat |
219 |
Q |
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|||| |||||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
27648395 |
tttgcaattgaattgactatatgttatacatacttacattgccggtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcat |
27648493 |
T |
|
| Q |
220 |
atgaaagcccgagaataacctcgggagcatgataggacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcattgac |
319 |
Q |
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|||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27648494 |
atgaaagcccgagaataacctcaggagcacgataggacctcgactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgac |
27648593 |
T |
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| Q |
320 |
cttcatctcac |
330 |
Q |
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||||| ||||| |
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| T |
27648594 |
cttcacctcac |
27648604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 139 - 330
Target Start/End: Original strand, 27708599 - 27708789
Alignment:
| Q |
139 |
actatatattatacttacattgccattacaaagttctgccaaagatgcatccaagggaccagatatcaatcatcttgtcatatgaaagcccgagaataac |
238 |
Q |
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| T |
27708599 |
actatatattatacttacattgccagtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcgtatgaaagcccgagaataac |
27708697 |
T |
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| Q |
239 |
ctcgggagcatgataggacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcattgaccttcatctcac |
330 |
Q |
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| T |
27708698 |
ctcgggagcactataggacctagactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcac |
27708789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 139 - 330
Target Start/End: Original strand, 27728425 - 27728615
Alignment:
| Q |
139 |
actatatattatacttacattgccattacaaagttctgccaaagatgcatccaagggaccagatatcaatcatcttgtcatatgaaagcccgagaataac |
238 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
27728425 |
actatatattatacttacattgccagtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcgtatgaaagcccgagaataac |
27728523 |
T |
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| Q |
239 |
ctcgggagcatgataggacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcattgaccttcatctcac |
330 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
27728524 |
ctcgggagcactataggacctagactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcac |
27728615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 27597557 - 27597602
Alignment:
| Q |
25 |
cacgaatcaaggatcaagcagtatattttggggtaaattagaccta |
70 |
Q |
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| T |
27597557 |
cacgaatcaaggatcaagcagtaaattttggggtaaattagaccta |
27597602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 27597646 - 27597683
Alignment:
| Q |
293 |
aaaacaactacttccaagatcattgaccttcatctcac |
330 |
Q |
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|||||||||||||||||||||| ||||||||| ||||| |
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| T |
27597646 |
aaaacaactacttccaagatcaatgaccttcacctcac |
27597683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 139 - 330
Target Start/End: Original strand, 7004 - 7194
Alignment:
| Q |
139 |
actatatattatacttacattgccattacaaagttctgccaaagatgcatccaagggaccagatatcaatcatcttgtcatatgaaagcccgagaataac |
238 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
7004 |
actatatattatacttacattgccagtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcgtatgaaagcccgagaataac |
7102 |
T |
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| Q |
239 |
ctcgggagcatgataggacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcattgaccttcatctcac |
330 |
Q |
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| T |
7103 |
ctcgggagcacaataggacctagactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcac |
7194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 29264064 - 29264107
Alignment:
| Q |
25 |
cacgaatcaaggatcaagcagtatattttggggtaaattagacc |
68 |
Q |
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| T |
29264064 |
cacgaatcaaggatcaagcagtaaattttggggtaaattagacc |
29264107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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