View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_low_28 (Length: 335)

Name: NF12740_low_28
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_low_28
NF12740_low_28
[»] chr5 (16 HSPs)
chr5 (20-314)||(39839805-39840099)
chr5 (96-218)||(12831493-12831615)
chr5 (96-218)||(12863468-12863590)
chr5 (116-181)||(7465257-7465322)
chr5 (112-276)||(19314999-19315163)
chr5 (122-218)||(21041946-21042042)
chr5 (126-181)||(29994652-29994707)
chr5 (124-186)||(7961152-7961214)
chr5 (102-264)||(27482657-27482819)
chr5 (113-181)||(16610602-16610670)
chr5 (226-293)||(31124185-31124252)
chr5 (112-186)||(26778715-26778789)
chr5 (122-183)||(18967885-18967946)
chr5 (102-182)||(11305854-11305934)
chr5 (249-293)||(17971989-17972033)
chr5 (124-156)||(32017992-32018024)
[»] chr4 (21 HSPs)
chr4 (48-309)||(30972321-30972581)
chr4 (62-297)||(27269952-27270187)
chr4 (62-212)||(21204844-21204994)
chr4 (96-218)||(20510390-20510512)
chr4 (124-309)||(52577890-52578075)
chr4 (116-186)||(10552667-10552737)
chr4 (102-276)||(22653226-22653400)
chr4 (91-212)||(37772915-37773036)
chr4 (124-208)||(48336967-48337051)
chr4 (230-293)||(16584335-16584398)
chr4 (116-181)||(30739519-30739584)
chr4 (122-181)||(11131193-11131252)
chr4 (112-183)||(29969876-29969947)
chr4 (132-181)||(18921946-18921995)
chr4 (122-186)||(25130447-25130511)
chr4 (231-291)||(25197110-25197170)
chr4 (122-158)||(54870824-54870860)
chr4 (107-186)||(19846557-19846636)
chr4 (107-186)||(29521680-29521759)
chr4 (248-277)||(13137018-13137047)
chr4 (107-183)||(43001741-43001817)
[»] chr7 (21 HSPs)
chr7 (80-309)||(40347888-40348114)
chr7 (107-257)||(12092634-12092784)
chr7 (103-309)||(17116390-17116596)
chr7 (125-213)||(27076574-27076662)
chr7 (125-213)||(27201639-27201727)
chr7 (127-303)||(29374715-29374891)
chr7 (102-181)||(34237188-34237267)
chr7 (116-186)||(40616734-40616804)
chr7 (96-218)||(41529387-41529509)
chr7 (125-186)||(27854911-27854972)
chr7 (237-277)||(16560029-16560069)
chr7 (237-277)||(16605593-16605633)
chr7 (107-183)||(26569739-26569815)
chr7 (126-186)||(38342993-38343053)
chr7 (249-293)||(41216339-41216383)
chr7 (226-293)||(37237909-37237976)
chr7 (110-181)||(38153939-38154010)
chr7 (113-276)||(47543365-47543528)
chr7 (107-141)||(7694374-7694408)
chr7 (236-293)||(14315512-14315569)
chr7 (102-147)||(42017855-42017900)
[»] chr2 (21 HSPs)
chr2 (48-306)||(35590132-35590389)
chr2 (242-309)||(39117324-39117391)
chr2 (231-293)||(21936723-21936785)
chr2 (123-186)||(841555-841618)
chr2 (242-309)||(18766576-18766643)
chr2 (102-309)||(30505621-30505828)
chr2 (102-216)||(37738071-37738186)
chr2 (116-186)||(24739846-24739916)
chr2 (116-181)||(1997697-1997762)
chr2 (127-272)||(37120900-37121045)
chr2 (102-218)||(36176628-36176743)
chr2 (238-293)||(37268135-37268190)
chr2 (107-186)||(45131117-45131196)
chr2 (107-309)||(9840672-9840874)
chr2 (116-158)||(40426926-40426968)
chr2 (113-218)||(27009195-27009300)
chr2 (122-279)||(31640176-31640332)
chr2 (237-293)||(9583543-9583599)
chr2 (106-181)||(20948142-20948217)
chr2 (97-131)||(41302004-41302038)
chr2 (123-183)||(44735982-44736042)
[»] chr3 (18 HSPs)
chr3 (92-216)||(25845647-25845771)
chr3 (96-215)||(33692880-33692999)
chr3 (125-186)||(19979287-19979348)
chr3 (91-212)||(25408767-25408888)
chr3 (122-181)||(29542393-29542452)
chr3 (122-181)||(41878726-41878785)
chr3 (122-218)||(6925948-6926044)
chr3 (237-293)||(51346347-51346403)
chr3 (122-218)||(53876887-53876983)
chr3 (116-182)||(42806289-42806355)
chr3 (225-293)||(44781767-44781835)
chr3 (125-181)||(47161022-47161078)
chr3 (122-181)||(22534037-22534096)
chr3 (226-293)||(35503849-35503916)
chr3 (126-181)||(37537238-37537293)
chr3 (122-180)||(6894228-6894286)
chr3 (109-183)||(36803190-36803264)
chr3 (119-147)||(42674100-42674128)
[»] chr6 (21 HSPs)
chr6 (20-276)||(14215926-14216180)
chr6 (91-304)||(9907069-9907282)
chr6 (91-216)||(22469421-22469546)
chr6 (242-309)||(12688093-12688160)
chr6 (116-186)||(32533064-32533134)
chr6 (122-181)||(11298598-11298657)
chr6 (115-181)||(18672069-18672134)
chr6 (122-311)||(11324371-11324560)
chr6 (126-169)||(18015755-18015798)
chr6 (242-308)||(27105180-27105244)
chr6 (242-308)||(27146989-27147053)
chr6 (248-293)||(34520512-34520557)
chr6 (122-186)||(17292772-17292836)
chr6 (122-158)||(29321330-29321366)
chr6 (231-291)||(33548676-33548736)
chr6 (102-181)||(7824123-7824202)
chr6 (91-182)||(12688220-12688311)
chr6 (247-277)||(24639112-24639142)
chr6 (112-181)||(2682796-2682865)
chr6 (108-165)||(10944163-10944220)
chr6 (116-181)||(15117251-15117316)
[»] chr1 (21 HSPs)
chr1 (116-308)||(4889357-4889549)
chr1 (91-303)||(44675007-44675219)
chr1 (108-315)||(34703474-34703681)
chr1 (122-181)||(12688212-12688271)
chr1 (107-309)||(22583181-22583383)
chr1 (107-181)||(26260785-26260859)
chr1 (122-181)||(28442151-28442210)
chr1 (107-277)||(9484783-9484953)
chr1 (122-186)||(5411768-5411832)
chr1 (122-218)||(48973648-48973744)
chr1 (91-272)||(52626451-52626630)
chr1 (226-277)||(51800488-51800539)
chr1 (107-301)||(25392313-25392507)
chr1 (102-156)||(36098606-36098660)
chr1 (113-274)||(40708441-40708601)
chr1 (231-291)||(33136223-33136283)
chr1 (230-293)||(48610916-48610979)
chr1 (116-158)||(28400552-28400594)
chr1 (132-218)||(31069642-31069728)
chr1 (125-158)||(45718390-45718423)
chr1 (240-276)||(6723835-6723871)
[»] chr8 (16 HSPs)
chr8 (110-191)||(21523884-21523965)
chr8 (130-303)||(39435468-39435640)
chr8 (123-216)||(8462520-8462613)
chr8 (110-181)||(37929141-37929212)
chr8 (132-306)||(9060672-9060846)
chr8 (230-293)||(459200-459263)
chr8 (122-186)||(7179036-7179100)
chr8 (104-186)||(10183457-10183539)
chr8 (116-181)||(38233236-38233301)
chr8 (249-308)||(16840208-16840267)
chr8 (110-181)||(31686422-31686493)
chr8 (122-157)||(41255043-41255078)
chr8 (116-158)||(38685817-38685859)
chr8 (96-156)||(5048545-5048605)
chr8 (116-158)||(33191203-33191245)
chr8 (101-181)||(5752015-5752095)
[»] scaffold0047 (1 HSPs)
scaffold0047 (91-291)||(64262-64462)
[»] scaffold0204 (1 HSPs)
scaffold0204 (124-208)||(24489-24573)
[»] scaffold0225 (1 HSPs)
scaffold0225 (122-180)||(6540-6598)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 39840099 - 39839805
Alignment:
Q  20 agaaagacaccagagtcacagaagcatttatttacaagggaaaacaaaaaacagtaacttaagaaaaccactaacaattaatctatacccaacatggtga 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  39840099 agaaagacaccagagtcacagaagcaattatttacaagggaaaacaaaaaacagtaacttaagaaaaccactaacaattaacctatacacaacatggtga 39840000  T
Q  120 agggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39839999 agggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgtcttcaaccacatgaacgacgtcgacttaattttatcaaccacctgtag 39839900  T
Q  220 gatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattgagcgac 314  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39839899 gatagggcactctttgtcattgaacaacctattatttttttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattgatcgac 39839805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 12831493 - 12831615
Alignment:
Q  96 attaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcga 195  Q
    ||||| |||| |||||||| ||||| ||||||||||||||||||||| | || |||||||| |    ||| ||| ||||||||||||| || || |||||    
T  12831493 attaacctatgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccacataaaagagatcga 12831592  T
Q  196 cttaattttatcaaccacctgta 218  Q
    |||||| ||||||||||||||||    
T  12831593 cttaatcttatcaaccacctgta 12831615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 12863468 - 12863590
Alignment:
Q  96 attaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcga 195  Q
    ||||| |||| |||||||| ||||| ||||||||||||||||||||| | || |||||||| |    ||| ||| ||||||||||||| || || || ||    
T  12863468 attaacctatgcccaacatagtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccacataaaagagatgga 12863567  T
Q  196 cttaattttatcaaccacctgta 218  Q
    |||||| ||||||||||||||||    
T  12863568 cttaatcttatcaaccacctgta 12863590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 7465322 - 7465257
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||| ||||||  ||||||||||||||| |||||||||||||||| | ||||| |||||||||||    
T  7465322 gtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 7465257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 276
Target Start/End: Original strand, 19314999 - 19315163
Alignment:
Q  112 catggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaacc 211  Q
    |||||| || || |||||||||||||||||||| ||  ||||||   | | ||| ||||||||||||||||| || |  |  |||||||| |||||||||    
T  19314999 catggtaaacgggctaagccaccaaccatgataattccagggaaataaagcaaatttcgccttcaaccacataaatgtgagtgacttaatcttatcaacc 19315098  T
Q  212 acctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttccca 276  Q
    ||||| |  |  |  || |||||| | ||||| |||||||||||||||||||| || ||||||||    
T  19315099 acctgcattaccgaccattctttgcctttgaataacctgttatttctttctttccaaatttccca 19315163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 21042042 - 21041946
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgta 218  Q
    |||||||||||||| |||||||| ||||||||||||| |  ||||||| |||  |||||| |||| | || | |||||||||| || ||||||||||    
T  21042042 ggactaagccaccacccatgataattaaagggaagagttacaaacttcacctataaccacttgaaagtcaacaacttaattttgtccaccacctgta 21041946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 29994707 - 29994652
Alignment:
Q  126 taagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||||||||||||||||| || ||||||||| | ||||||||| |||||||||||    
T  29994707 taagccaccaaccatgataattgaagggaagaaaaggaaacttcaccttcaaccac 29994652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 7961152 - 7961214
Alignment:
Q  124 actaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    |||||||||||||||||||||||||||  ||||||  | | ||||||||||||||||| ||||    
T  7961152 actaagccaccaaccatgatagttaaaatgaagagtagcatacttcgccttcaaccacttgaa 7961214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 264
Target Start/End: Original strand, 27482657 - 27482819
Alignment:
Q  102 ctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaat 201  Q
    |||| |||||||||||||| |||||||||||||| |||||||| || |||||||| |      | ||| |||||||||||   || |  |  ||||||||    
T  27482657 ctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaagtgtaacgtatttcaccttcaaccaccaaaaggcgagggacttaat 27482756  T
Q  202 tttatcaaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttt 264  Q
     |||||||||||||| |  |  | ||| ||||| ||||| |||||||||||||||||||||||    
T  27482757 cttatcaaccacctgaattaccgagcattctttatcattaaacaacctgttatttctttcttt 27482819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 16610670 - 16610602
Alignment:
Q  113 atggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||| || |||||||||||||| |||||||| || |||||||||||   |||||||| ||||||||||    
T  16610670 atggtaaacggactaagccaccacccatgataattgaagggaagagaaacaaacttcgtcttcaaccac 16610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 31124252 - 31124185
Alignment:
Q  226 gcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||||||||  ||||||| | |||||||||||||||||| || |||||||||  ||||||| ||||||    
T  31124252 gcactctttagcattgaaaatcctgttatttctttctttccagatttcccacacagtagcaaaccaaa 31124185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 26778715 - 26778789
Alignment:
Q  112 catggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    |||||| || ||||||| ||||||||||||||| || |||| ||||||   ||| ||| ||||||||||||||||    
T  26778715 catggtaaacggactaaaccaccaaccatgataattgaaggaaagagaaaaaaatttcaccttcaaccacatgaa 26778789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 18967946 - 18967885
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacat 183  Q
    ||||||||||| || |||||||  ||||| |||||||| | ||| |||||||||||||||||    
T  18967946 ggactaagccatcatccatgatcattaaatggaagagaagcaaatttcgccttcaaccacat 18967885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 11305934 - 11305854
Alignment:
Q  102 ctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccaca 182  Q
    |||| ||||||||  |||| ||||||||||||||| |||| ||||| ||||| |||   ||||  ||||||||||||||||    
T  11305934 ctatgcccaacatattgaatggactaagccaccaaacatggtagttgaaggggagattaggaattttcgccttcaaccaca 11305854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 17971989 - 17972033
Alignment:
Q  249 tgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||||||||||||||| ||||||||||||  ||||||| ||||||    
T  17971989 tgttatttctttctttccatatttcccacacagtagcaaaccaaa 17972033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 32017992 - 32018024
Alignment:
Q  124 actaagccaccaaccatgatagttaaagggaag 156  Q
    ||||||||||||||||||||| |||||||||||    
T  32017992 actaagccaccaaccatgataattaaagggaag 32018024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 48 - 309
Target Start/End: Original strand, 30972321 - 30972581
Alignment:
Q  48 tatttacaagggaaaacaaaaaacagtaacttaagaaaaccactaacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagtt 147  Q
    ||||||||||||||||| |||| |||| ||| |||||| | | |||| ||||  |||| || || || |||||  ||||||||||||| |||||||||||    
T  30972321 tatttacaagggaaaaccaaaa-cagtgactaaagaaagcaaataactattagcctatgccaaaaatagtgaaatgactaagccaccagccatgatagtt 30972419  T
Q  148 aaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtaggatagggcactctttgtcattgaacaac 247  Q
     ||||||||||| ||||| |||||||||| ||||||||| | || |||||||||||||||||||||||| |  || | |||||||||| |||| || | |    
T  30972420 gaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcgacttaattttatcaaccacctgcataattgagcactctttgccattaaagagc 30972519  T
Q  248 ctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattga 309  Q
     |||||||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||    
T  30972520 atgttatttctttctttccaaattttccacgtagttgcataccaaagaacctgtaaaattga 30972581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 297
Target Start/End: Original strand, 27269952 - 27270187
Alignment:
Q  62 aacaaaaaacagtaacttaagaaaaccactaacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatg 161  Q
    |||||||| || ||||| |||||||| | |||| ||||   |||  |||| || ||||| ||||||||||||||||||||||| || |||||||| || |    
T  27269952 aacaaaaagcattaactaaagaaaacaaataactattagcatatgtccaaaattgtgaatggactaagccaccaaccatgataattgaagggaagtgaag 27270051  T
Q  162 gaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttc 261  Q
    |||| |||||||||||||||||||| |  || |||||||||||||||||||| || |  || || || |   || | || || | | |||||||||||||    
T  27270052 gaaatttcgccttcaaccacatgaaagtgattgacttaattttatcaaccacgtgaacaattggtcattgagtgcctttaaagagcatgttatttctttc 27270151  T
Q  262 ttttcatatttcccacgtagtagcataccaaagaac 297  Q
    ||| || ||||| ||||| || ||||||||||||||    
T  27270152 tttccagatttctcacgttgttgcataccaaagaac 27270187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 212
Target Start/End: Original strand, 21204844 - 21204994
Alignment:
Q  62 aacaaaaaacagtaacttaagaaaaccactaacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatg 161  Q
    |||||||| || ||||| |||||||| | |||| ||||  ||||  |||| || ||||| | ||||||||||||||||||||| || |||||||| || |    
T  21204844 aacaaaaagcattaactaaagaaaacaaataactattagcctatgtccaaaattgtgaatgaactaagccaccaaccatgataattgaagggaagtgaag 21204943  T
Q  162 gaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaacca 212  Q
     ||| ||||| |||||||||||||| |  || |||||||||||||||||||    
T  21204944 aaaatttcgcattcaaccacatgaaagtgattgacttaattttatcaacca 21204994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 20510512 - 20510390
Alignment:
Q  96 attaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcga 195  Q
    ||||| |||| |||| ||||||||| ||||||||||||||||||||| | || |||||||| |    ||| ||| ||||||||||||| || || || ||    
T  20510512 attaacctatgcccagcatggtgaacggactaagccaccaaccatgaaaattgaagggaagcgtgttaaatttcaccttcaaccacataaaagagatgga 20510413  T
Q  196 cttaattttatcaaccacctgta 218  Q
    |||||| ||||||||||||||||    
T  20510412 cttaatcttatcaaccacctgta 20510390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 309
Target Start/End: Complemental strand, 52578075 - 52577890
Alignment:
Q  124 actaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtaggata 223  Q
    ||||||||||||||||||||| || ||||||||||||  ||||||| ||||||||||| | || |  |  |||||||| ||||| | |||||| || |      
T  52578075 actaagccaccaaccatgataattgaagggaagagatacaaacttcaccttcaaccacgtaaaagcaagggacttaatcttatctatcacctgaagaacc 52577976  T
Q  224 gggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattga 309  Q
    | |||  |||| |||||||| | ||||||||||||||| || || |||||||||   |||||| ||||||  ||||||| ||||||    
T  52577975 gagcaaactttatcattgaaaagcctgttatttctttccttccagatttcccacaccgtagcaaaccaaatgacctgtagaattga 52577890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 10552737 - 10552667
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    ||||| |||||||||||||||||||||||||||||||||||||  | | ||||| ||||||||||| ||||    
T  10552737 gtgaacggactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccacttgaa 10552667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 276
Target Start/End: Complemental strand, 22653400 - 22653226
Alignment:
Q  102 ctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaat 201  Q
    |||||| || |||||| ||  |||||||||||||||||||||| || |||| ||   | | ||| ||||||||||||||||| || |  | ||| |||||    
T  22653400 ctatactcagcatggtaaacagactaagccaccaaccatgataattgaaggtaatgtaagcaaatttcgccttcaaccacataaatgtgagcgatttaat 22653301  T
Q  202 tttatcaaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttccca 276  Q
     ||||||||||||||||  |  | |||   |||||| ||||| | ||||||||||||||||||||| ||||||||    
T  22653300 cttatcaaccacctgtattaccgagcatagtttgtctttgaatagcctgttatttctttcttttcaaatttccca 22653226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 37773036 - 37772915
Alignment:
Q  91 taacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgac 190  Q
    |||||||||| | || ||||| |||||||| |||||||||||||||||||| || || ||||||||||| ||||| |||   |||||||| | ||| |      
T  37773036 taacaattaaccaatgcccaaaatggtgaaaggactaagccaccaaccatggtaattgaagggaagagaaggaaatttctttttcaaccataagaaagtg 37772937  T
Q  191 atcgacttaattttatcaacca 212  Q
    | ||||||||| ||||||||||    
T  37772936 agcgacttaatgttatcaacca 37772915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 48337051 - 48336967
Alignment:
Q  124 actaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatca 208  Q
    ||||| |||||||| |||||  || ||||||||||| ||||| |||||||||||||||||||| |  | ||||||||||||||||    
T  48337051 actaaaccaccaactatgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcgacttaattttatca 48336967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 16584398 - 16584335
Alignment:
Q  230 tctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||  |||| ||||||||||||||    
T  16584398 tctttatcattgaataacttgttatttctttcttttcatatttttcacgcagtagcataccaaa 16584335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 30739519 - 30739584
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||| ||||||  ||||||||||||||| |||||||||||||||| | ||||| |||||||||||    
T  30739519 gtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 30739584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 11131193 - 11131252
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||||||||||||||||||||| |||||||||||||    ||||||| |||||||||||    
T  11131193 ggactaagccaccaaccatgataattaaagggaagagtgacaaacttcaccttcaaccac 11131252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 29969947 - 29969876
Alignment:
Q  112 catggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacat 183  Q
    ||||||||| ||||||||||||||||||| | |||  ||||||||||  | ||| |||||||||||||||||    
T  29969947 catggtgaacggactaagccaccaaccataaaagtagaagggaagagtagtaaatttcgccttcaaccacat 29969876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 18921995 - 18921946
Alignment:
Q  132 accaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||||||||||| |||||||||||||||| | ||||| |||||||||||    
T  18921995 accaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 18921946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 25130447 - 25130511
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    |||||||||||||||||||||||||| | || |||||  | ||| ||| ||||||||||||||||    
T  25130447 ggactaagccaccaaccatgatagttgagggaaagagtagcaaatttctccttcaaccacatgaa 25130511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 25197170 - 25197110
Alignment:
Q  231 ctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcatacca 291  Q
    ||||| ||| ||| |||||| |||||||||||||  ||||||||||| |||||||||||||    
T  25197170 ctttgccatcgaataacctgatatttctttctttctatatttcccacatagtagcatacca 25197110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 54870824 - 54870860
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagag 158  Q
    ||||||||||||||||||||||| |||||||||||||    
T  54870824 ggactaagccaccaaccatgataattaaagggaagag 54870860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 19846636 - 19846557
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    ||||||||||| || ||||||| |||||| |||||||| || ||||||||||| | | ||||| |||| || ||||||||    
T  19846636 cccaacatggtaaacggactaatccaccacccatgataattgaagggaagagaagcatacttcacctttaaacacatgaa 19846557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 29521680 - 29521759
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    |||||||| ||||| ||| ||| ||||||| ||||||| || || |||||||| | | | ||||||||||||||||||||    
T  29521680 cccaacattgtgaacggattaaaccaccaatcatgataattgaaaggaagagaagcacatttcgccttcaaccacatgaa 29521759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 13137047 - 13137018
Alignment:
Q  248 ctgttatttctttcttttcatatttcccac 277  Q
    ||||||||||||||||||||||||||||||    
T  13137047 ctgttatttctttcttttcatatttcccac 13137018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 43001817 - 43001741
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacat 183  Q
    ||||||||| |||| ||||||||||||||   |||||| || ||  ||||||  | |||||||||||||||||||||    
T  43001817 cccaacatgctgaacggactaagccaccacatatgataattgaaatgaagagtagtaaacttcgccttcaaccacat 43001741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 80 - 309
Target Start/End: Complemental strand, 40348114 - 40347888
Alignment:
Q  80 aagaaaaccactaacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaacc 179  Q
    |||||| ||| |||| |||| |||||  ||||||| ||||| ||  ||||||| |||||||||||||| || |||||| |||||||||||||||||||||    
T  40348114 aagaaagccaataactattagtctatgtccaacatagtgaaagggttaagccatcaaccatgatagttgaaaggaagaaatggaaacttcgccttcaacc 40348015  T
Q  180 acatgaacgacatcgacttaattttatcaaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgt 279  Q
    ||||||||| || ||||||||||||||| |||| ||| |  || |||||||||||  |||||||||  ||||||||||||||||| ||||||||||||      
T  40348014 acatgaacgtcagcgacttaattttatctaccatctgcataattgggcactctttaccattgaacagtctgttatttctttctttccatatttcccac-- 40347917  T
Q  280 agtagcataccaaagaacctgtaaaattga 309  Q
     || ||||||| ||||||||||||||||||    
T  40347916 -gtggcatacctaagaacctgtaaaattga 40347888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 257
Target Start/End: Complemental strand, 12092784 - 12092634
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttat 206  Q
    |||||||| || || |||||||||||| | ||||||||||| ||||||||||| | ||| |||||||||||||||||||| || |  |||||||| ||||    
T  12092784 cccaacatagtaaatggactaagccactatccatgatagtttaagggaagagaggaaaatttcgccttcaaccacatgaaggaaagtgacttaatcttat 12092685  T
Q  207 caaccacctgtaggatagggcactctttgtcattgaacaacctgttatttc 257  Q
    | |||||||||| ||| | ||| |||||  ||||||| |  ||||||||||    
T  12092684 ctaccacctgtaagatcgagcattctttagcattgaatattctgttatttc 12092634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 309
Target Start/End: Original strand, 17116390 - 17116596
Alignment:
Q  103 tatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaatt 202  Q
    ||||||||| ||||| ||  ||||||||||||||||||||||  | ||||||||||| | | | ||||||||||||||||| || |  |  ||||||||     
T  17116390 tatacccaatatggtaaacagactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttcaaccacataaatgcgagtgacttaatc 17116489  T
Q  203 ttatcaaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgta 302  Q
    ||||||||||| ||||  |  | ||| |||||| | ||||| |||||||||||||||||||| || ||||| ||  |  ||||| |||||| ||| ||||    
T  17116490 ttatcaaccacttgtattaccgagcaatctttgcctttgaataacctgttatttctttctttccaaatttctcaaatgatagcaaaccaaataacttgta 17116589  T
Q  303 aaattga 309  Q
    |||||||    
T  17116590 aaattga 17116596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 27076662 - 27076574
Alignment:
Q  125 ctaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccac 213  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||| | || | ||| |||||||||||||||    
T  27076662 ctaagccaccaaccatgatagttgaagggaatagatggaaacttcgccttctaccacctgaaagtcagctactcaattttatcaaccac 27076574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 27201639 - 27201727
Alignment:
Q  125 ctaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccac 213  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||| | || | ||| |||||||||||||||    
T  27201639 ctaagccaccaaccatgatagttgaagggaatagatggaaacttcgccttctaccacctgaaagtcagctactcaattttatcaaccac 27201727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 303
Target Start/End: Original strand, 29374715 - 29374891
Alignment:
Q  127 aagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtaggataggg 226  Q
    ||||||||| ||||||||||| |   ||||||| ||||||||||||||||||||||| || |||| ||| ||||||||||| ||||||||||  || | |    
T  29374715 aagccaccagccatgatagttgagatgaagagaaggaaacttcgccttcaaccacataaaagacagcgatttaattttatccaccacctgtaaaattgag 29374814  T
Q  227 cactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaa 303  Q
    || | |||  || |||| | ||| || ||||||||||| || || |||||||  || ||| ||||||||||||||||    
T  29374815 cattgtttaccagtgaagatcctattgtttctttctttccagatctcccacgatgttgcaaaccaaagaacctgtaa 29374891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 34237267 - 34237188
Alignment:
Q  102 ctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||| |||||||||||||| ||||||||||||||||||||||| || ||||||| |    |||| |||||||||||||||    
T  34237267 ctatgcccaacatggtgaaaggactaagccaccaaccatgataattgaagggaataatatgaaatttcgccttcaaccac 34237188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 40616734 - 40616804
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    ||||| |||||||||||||||||| ||||||||||||||||||  | | ||||| ||||||||||| ||||    
T  40616734 gtgaacggactaagccaccaaccaagatagttaaagggaagagtagcatacttcaccttcaaccacttgaa 40616804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 41529509 - 41529387
Alignment:
Q  96 attaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcga 195  Q
    ||||| |||| |||| ||||||||| |||||||| |||||||||||| | || |||||||| |    ||| |||  |||||||||||| || || || ||    
T  41529509 attaacctatgcccagcatggtgaacggactaagtcaccaaccatgaaaattgaagggaagcgtgttaaatttcatcttcaaccacataaaagagatgga 41529410  T
Q  196 cttaattttatcaaccacctgta 218  Q
    |||||| ||||||||||||||||    
T  41529409 cttaatcttatcaaccacctgta 41529387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 27854972 - 27854911
Alignment:
Q  125 ctaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    |||||||||||||||||||||||||||||||| |  | | ||||| ||||||||||| ||||    
T  27854972 ctaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaa 27854911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 16560069 - 16560029
Alignment:
Q  237 cattgaacaacctgttatttctttcttttcatatttcccac 277  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  16560069 cattgaataacctgttatttctttctttccatatttcccac 16560029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 16605593 - 16605633
Alignment:
Q  237 cattgaacaacctgttatttctttcttttcatatttcccac 277  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  16605593 cattgaataacctgttatttctttctttccatatttcccac 16605633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 26569815 - 26569739
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacat 183  Q
    |||||||| ||||| ||||  |||||||| |||||||| || ||||||||||| | ||  |||||||||||||||||    
T  26569815 cccaacatagtgaacggacatagccaccatccatgataattgaagggaagagaagcaagtttcgccttcaaccacat 26569739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 38343053 - 38342993
Alignment:
Q  126 taagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    |||| |||||||||||||||||||||||||||| |  || |||| ||||||||||| ||||    
T  38343053 taagtcaccaaccatgatagttaaagggaagagttacaagcttcaccttcaaccacttgaa 38342993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 41216339 - 41216383
Alignment:
Q  249 tgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||||||||||||||| |||||||| |||| ||||||||||||||    
T  41216339 tgttatttctttctttccatatttcacacgcagtagcataccaaa 41216383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 37237909 - 37237976
Alignment:
Q  226 gcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||||||||  ||||||| |  ||||||||||||||||| ||||||||||||  ||||||| ||||||    
T  37237909 gcactctttaccattgaagatactgttatttctttctttacatatttcccacacagtagcaaaccaaa 37237976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 38154010 - 38153939
Alignment:
Q  110 aacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||| ||||||  ||||||||||||| | ||| ||||||||||||||||  ||||| ||| |||||||||||    
T  38154010 aacaaggtgaacagactaagccaccatctatggtagttaaagggaagagtaggaaatttcaccttcaaccac 38153939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 276
Target Start/End: Complemental strand, 47543528 - 47543365
Alignment:
Q  113 atggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaacca 212  Q
    ||||| || ||||||||||| || |||||||| || |||||||||||   |||||||| |||||||||| | || |  | ||||||||| || || ||||    
T  47543528 atggtaaacggactaagccatcacccatgataattgaagggaagagaactaaacttcgtcttcaaccacgtaaaagcaagcgacttaatcttgtcgacca 47543429  T
Q  213 cctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttccca 276  Q
    |||| |  |  |  || |||||| |||| |||||||| || |||||||| || |||||||||||    
T  47543428 cctggataaccgaacaatctttgacattaaacaacctattgtttctttccttccatatttccca 47543365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 7694374 - 7694408
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatg 141  Q
    |||||||| ||||||||||||||||||||||||||    
T  7694374 cccaacatagtgaagggactaagccaccaaccatg 7694408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 14315512 - 14315569
Alignment:
Q  236 tcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||||||| | ||||||||||||||| || || |||||||||| ||||||| ||||||    
T  14315512 tcattgaatatcctgttatttctttccttccaaatttcccacgcagtagcaaaccaaa 14315569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 42017900 - 42017855
Alignment:
Q  102 ctatacccaacatggtgaagggactaagccaccaaccatgatagtt 147  Q
    |||| |||||||| ||||| |||||||||||||| |||||||||||    
T  42017900 ctatgcccaacatagtgaacggactaagccaccatccatgatagtt 42017855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 48 - 306
Target Start/End: Complemental strand, 35590389 - 35590132
Alignment:
Q  48 tatttacaagggaaaacaaaaaacagtaacttaagaaaaccactaacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagtt 147  Q
    ||||||||||||||| ||||||| ||| |    ||||| ||| |||| ||||  |||| ||||| || | |||||| |||||||||||||||||||||||    
T  35590389 tatttacaagggaaa-caaaaaatagtgaaaacagaaagccattaactattagcctatgcccaaaatagagaaggggctaagccaccaaccatgatagtt 35590291  T
Q  148 aaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtaggatagggcactctttgtcattgaacaac 247  Q
     ||||||||| | ||| |||||||||||| |||| |||| | || | |||||||||||||||||||||| |  || | ||| |||||| ||||||| |||    
T  35590290 gaagggaagacacggatacttcgccttcagccacctgaaagtcagcaacttaattttatcaaccacctgaataattgagcattctttgccattgaaaaac 35590191  T
Q  248 ctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaat 306  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||    
T  35590190 ctgttatttctttctttccagatttcccacgtagttgcataccaaagaacatgtaaaat 35590132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 39117391 - 39117324
Alignment:
Q  242 aacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattga 309  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||||||||| |||||||||||||||    
T  39117391 aacaacctgttatttctttctttccagatttcccacatagtagcataccaaataacctgtaaaattga 39117324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 21936723 - 21936785
Alignment:
Q  231 ctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21936723 ctttatcactgaataacctgttatttctttctttccatatttcccacgtagtagcataccaaa 21936785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 841555 - 841618
Alignment:
Q  123 gactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    ||||||||||||||||||||||||||||||||||||  | | ||||| ||||||||||| ||||    
T  841555 gactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttcaaccacttgaa 841618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 18766643 - 18766576
Alignment:
Q  242 aacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattga 309  Q
    ||||||||||| |||||||||||  | ||||| ||| ||||||||||||||| |||||||||||||||    
T  18766643 aacaacctgttgtttctttctttctagatttctcacatagtagcataccaaataacctgtaaaattga 18766576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 309
Target Start/End: Complemental strand, 30505828 - 30505621
Alignment:
Q  102 ctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaat 201  Q
    |||| ||||||||||| ||  |||||| ||||||||||||||| || |||||||| || | ||| ||| |||||||| | || || |  |   |||||||    
T  30505828 ctatgcccaacatggtaaacagactaaaccaccaaccatgataattgaagggaagtgaagaaaatttctccttcaactagataaatgcgagaaacttaat 30505729  T
Q  202 tttatcaaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgt 301  Q
     ||||||||||| ||||  || | | | | |||||| ||||| | |||||||||||||||||| || ||||| ||   ||||||| |||||| |||||||    
T  30505728 cttatcaaccacatgtattatcgagtattttttgtctttgaatagcctgttatttctttctttccaaatttctcaaacagtagcaaaccaaataacctgt 30505629  T
Q  302 aaaattga 309  Q
    || |||||    
T  30505628 aatattga 30505621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 37738071 - 37738186
Alignment:
Q  102 ctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttca-accacatgaacgacatcgacttaa 200  Q
    |||| ||||| |||||||| |||||||||||||| |||||| |||||||||||||||  |  || ||||||||||  ||||||||| |  | ||||||||    
T  37738071 ctatgcccaaaatggtgaacggactaagccaccagccatgaaagttaaagggaagagtagtgaatttcgccttcaggccacatgaaagtgagcgacttaa 37738170  T
Q  201 ttttatcaaccacctg 216  Q
    | |||||| |||||||    
T  37738171 tcttatcagccacctg 37738186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 24739916 - 24739846
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    ||||| ||||||||||||||||||||||||||||||||||| |  | | ||||| ||||||||||| ||||    
T  24739916 gtgaacggactaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttcaaccacttgaa 24739846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 1997697 - 1997762
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||| ||||||  ||||||||||||||| |||||||||||||||| | ||||| |||||||||||    
T  1997697 gtgaaaggactattccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 1997762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 37120900 - 37121045
Alignment:
Q  127 aagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtaggataggg 226  Q
    ||||||||| |||| |||||| |  |||||||| | |||||| |||||||||||||| || || | |||||| |||||||||||||| || |  || | |    
T  37120900 aagccaccacccataatagttcagaggaagagaggtaaactttgccttcaaccacataaatgagagcgactttattttatcaaccacgtgaataatggag 37120999  T
Q  227 cactctttgtcattgaacaacctgttatttctttcttttcatattt 272  Q
    || || ||| | ||||| | | ||||||||||||||||||| ||||    
T  37121000 cattccttgactttgaatatcatgttatttctttcttttcagattt 37121045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 36176628 - 36176743
Alignment:
Q  102 ctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaat 201  Q
    |||||||||||||||| || |||||||  |||||||||||||| || ||| ||||||| | ||| ||| || | |||||||| || |  | |||||||||    
T  36176628 ctatacccaacatggtaaatggactaaaacaccaaccatgataattgaagagaagagaagcaaatttcaccat-aaccacataaatgtgagcgacttaat 36176726  T
Q  202 tttatcaaccacctgta 218  Q
     ||||||||||||||||    
T  36176727 cttatcaaccacctgta 36176743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 37268190 - 37268135
Alignment:
Q  238 attgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||||| |||||| |||||||| |||| ||||||||||||||||| ||||||||||    
T  37268190 attgaataacctgctatttcttactttccatatttcccacgtagtggcataccaaa 37268135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 45131117 - 45131196
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    |||| |||||| || |||||||||||||| |||||||| || ||||||||||| | | | ||| ||||||||||||||||    
T  45131117 cccagcatggtaaatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccacatgaa 45131196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 309
Target Start/End: Complemental strand, 9840874 - 9840672
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttat 206  Q
    |||| ||||||||| ||| ||||||||||||||||||| || || |||||||  | ||| || |||||||| ||||| || |  | ||| ||||| ||||    
T  9840874 cccatcatggtgaacggattaagccaccaaccatgataattgaatggaagagtagcaaattttgccttcaatcacataaaagcgagcgatttaatcttat 9840775  T
Q  207 caaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaat 306  Q
    ||||||| || |  |  | |||   |||||   |||| | |||||||||||||||||| || ||||||||  | |||||| |||| | ||||||||||||    
T  9840774 caaccacttgaattaccgagcatgatttgtttgtgaatatcctgttatttctttctttccaaatttcccaaatggtagcaaaccatataacctgtaaaat 9840675  T
Q  307 tga 309  Q
    |||    
T  9840674 tga 9840672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 40426926 - 40426968
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagag 158  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  40426926 gtgaacggattaagccaccaaccatgatagttaaagggaagag 40426968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 27009300 - 27009195
Alignment:
Q  113 atggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaacca 212  Q
    ||||| || |||||||||||||||||||| || || ||||||||||| | ||| ||||||||||| ||| | || |  |  |||||||| ||||||||||    
T  27009300 atggtaaacggactaagccaccaaccatggtaattgaagggaagagaagtaaatttcgccttcaatcacctaaaagcgagagacttaatcttatcaacca 27009201  T
Q  213 cctgta 218  Q
    | ||||    
T  27009200 cgtgta 27009195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 279
Target Start/End: Complemental strand, 31640332 - 31640176
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtagga 221  Q
    |||||||||||||| ||||| || || | ||||||||| | ||| ||||||||||||||| | || |  |  |||||||| ||||| ||||| || || |    
T  31640332 ggactaagccaccatccatggtaattgaggggaagagaagcaaatttcgccttcaaccacgtaaaagcaagtgacttaatcttatctaccacttgaagaa 31640233  T
Q  222 tagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgt 279  Q
      | |||  |||||||||||||  |||||||||||||||| || || |||||||||||    
T  31640232 c-gagcaaactttgtcattgaaggacctgttatttctttccttccaaatttcccacgt 31640176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 9583543 - 9583599
Alignment:
Q  237 cattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    ||||||| | ||||||||||||||||||| |||||||||||  ||||||| ||||||    
T  9583543 cattgaaaatcctgttatttctttctttttatatttcccacacagtagcaaaccaaa 9583599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 20948217 - 20948142
Alignment:
Q  106 acccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||||||||||| || |||||||||||||| ||||| || || | | ||||||| | | |||||||||||||||||    
T  20948217 acccaacatggtaaacggactaagccaccacccatggtaattgaggcgaagagaagaatacttcgccttcaaccac 20948142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 41302004 - 41302038
Alignment:
Q  97 ttaatctatacccaacatggtgaagggactaagcc 131  Q
    |||| ||||||||||||||||||||||||||||||    
T  41302004 ttaacctatacccaacatggtgaagggactaagcc 41302038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 44735982 - 44736042
Alignment:
Q  123 gactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacat 183  Q
    ||||||||||| |||||||| | || ||||||||||    |||||||||||||||||||||    
T  44735982 gactaagccactaaccatgaaaattgaagggaagagtattaaacttcgccttcaaccacat 44736042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 25845771 - 25845647
Alignment:
Q  92 aacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgaca 191  Q
    ||||||||||| || ||||| |||||| | |||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| || |    
T  25845771 aacaattaatcaatgcccaaaatggtgtatggactaagccaccaaccatggtagttcaagggcagagaaggaaacttcgccttcaaccacatgaaagaga 25845672  T
Q  192 tcgacttaattttatcaaccacctg 216  Q
     ||||||||||||||||||||||||    
T  25845671 gcgacttaattttatcaaccacctg 25845647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 33692880 - 33692999
Alignment:
Q  96 attaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcga 195  Q
    ||||| |||| |||| ||||||||| || |||||||||||||||||| |||| |||||||| |    ||| ||| ||||||||||||| || || || ||    
T  33692880 attaacctatgcccagcatggtgaacgggctaagccaccaaccatgaaagttgaagggaagcgtgttaaatttcaccttcaaccacataaaagagatgga 33692979  T
Q  196 cttaattttatcaaccacct 215  Q
    |||||| |||||||||||||    
T  33692980 cttaatcttatcaaccacct 33692999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 19979287 - 19979348
Alignment:
Q  125 ctaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    |||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||| ||||    
T  19979287 ctaagccaccaaccatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaa 19979348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 25408888 - 25408767
Alignment:
Q  91 taacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgac 190  Q
    |||||||||  |||||||||||||||| || ||||||||||||||||||||||| || |||| ||  || |  || |||||||||||||||| ||| |      
T  25408888 taacaattagcctatacccaacatggtaaatggactaagccaccaaccatgataattgaaggaaattgaagtgaatttcgccttcaaccacacgaatgtt 25408789  T
Q  191 atcgacttaattttatcaacca 212  Q
    || |||||||| ||||| ||||    
T  25408788 atagacttaatcttatcgacca 25408767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 29542393 - 29542452
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||    
T  29542393 ggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccac 29542452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 41878785 - 41878726
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||    
T  41878785 ggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccac 41878726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 6926044 - 6925948
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgta 218  Q
    |||||||||||||| |||||||| ||||||||||||| |  ||||||| |||| |||||| || | | || | |||||||||| || ||||||||||    
T  6926044 ggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgtaagtcaacaacttaattttgtccaccacctgta 6925948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 51346347 - 51346403
Alignment:
Q  237 cattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    ||||||| ||||||||| |||||||||| |||||||| |||| ||||||||||||||    
T  51346347 cattgaataacctgttaattctttctttccatatttctcacgcagtagcataccaaa 51346403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 53876887 - 53876983
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgta 218  Q
    |||| ||||||||| |||||||| ||||||||||||| |  ||||||| |||| |||||| |||| | || | |||||||||| || ||||||||||    
T  53876887 ggaccaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaacttaattttgtccaccacctgta 53876983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 42806289 - 42806355
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccaca 182  Q
    ||||| |||||||||||||| |||||||||||||| |||||||    ||||||| ||||||||||||    
T  42806289 gtgaatggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccaca 42806355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 44781767 - 44781835
Alignment:
Q  225 ggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||| |||||||||||||| |  ||||||||||||||||| || |||||||||  ||||||| ||||||    
T  44781767 ggcattctttgtcattgaaaattctgttatttctttctttccaaatttcccacacagtagcaaaccaaa 44781835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 47161078 - 47161022
Alignment:
Q  125 ctaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||||||||||||||| || || || |||||||| ||||||||| |||||||||||    
T  47161078 ctaagccaccaaccatggtaattgaatggaagagaaggaaacttcaccttcaaccac 47161022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 22534096 - 22534037
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||||||||||||| |||||||||||||| |||||||    ||||||| |||||||||||    
T  22534096 ggactaagccaccacccatgatagttaaaaggaagagtgacaaacttcaccttcaaccac 22534037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 35503916 - 35503849
Alignment:
Q  226 gcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||||| ||| ||||||| | |||||||||||||||||| |||||||||||   ||||||| ||||||    
T  35503916 gcactcgttgccattgaaaatcctgttatttctttctttccatatttcccaaacagtagcaaaccaaa 35503849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 37537238 - 37537293
Alignment:
Q  126 taagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||||||||||||||||||  ||||||||||||| |  |||||| |||||||||||    
T  37537238 taagccaccaaccatgataagtaaagggaagagaagcgaacttcaccttcaaccac 37537293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 6894286 - 6894228
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaacca 180  Q
    ||||||| ||||||||||||||| || |||||||||| |  |||| |||||||||||||    
T  6894286 ggactaatccaccaaccatgataattgaagggaagagttataaacctcgccttcaacca 6894228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 36803264 - 36803190
Alignment:
Q  109 caacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacat 183  Q
    |||||| ||||| ||||||||||||||| ||||| | || || |||| ||  | |||||||||||||||||||||    
T  36803264 caacattgtgaacggactaagccaccaagcatgaaaattgaaaggaatagtggtaaacttcgccttcaaccacat 36803190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 42674100 - 42674128
Alignment:
Q  119 aagggactaagccaccaaccatgatagtt 147  Q
    |||||||||||||||||||||||||||||    
T  42674100 aagggactaagccaccaaccatgatagtt 42674128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 14215926 - 14216180
Alignment:
Q  20 agaaagacaccagagtcacagaagcatttatttacaagggaaaacaaaaaacagtaacttaagaaaaccactaacaattaatctatacccaacatggtga 119  Q
    |||||||||||||||||||| || ||  ||||||||| ||| | ||||||||||| | | |||||| ||| |||| ||||  |||| ||||||||||| |    
T  14215926 agaaagacaccagagtcacaaaa-caaatatttacaatggata-caaaaaacagtgagtaaagaaagccaataactattagcctattcccaacatggtaa 14216023  T
Q  120 agggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtag 219  Q
    | ||  |||||||||||| ||||||||  ||| ||||||| ||||| |||  ||||||||||||||||| || |||||||| |||||||| |||||| |     
T  14216024 aagggttaagccaccaactatgatagtcgaagagaagagaaggaaatttcttcttcaaccacatgaacgtcagcgacttaactttatcaatcacctgcac 14216123  T
Q  220 gatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttccca 276  Q
     || | ||| |||||| |||| || | ||| ||||| |||||||| |||||||||||    
T  14216124 aattgagcattctttgccattaaataccctattattcctttctttccatatttccca 14216180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 91 - 304
Target Start/End: Complemental strand, 9907282 - 9907069
Alignment:
Q  91 taacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgac 190  Q
    |||||||||  |||| || || |||||||| ||| ||||||||||  ||||||| || ||||||| ||| ||  | ||| |||||||||||||||| |      
T  9907282 taacaattagcctatgcctaaaatggtgaatggattaagccaccacgcatgataattgaagggaatagaagggtatttctccttcaaccacatgaaagcg 9907183  T
Q  191 atcgacttaattttatcaaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcatacc 290  Q
    | ||||||||||||||| ||||||||  | |||| |   || ||| |||| || |||||||||||||||||||| || |||||||||| ||| ||| |||    
T  9907182 agcgacttaattttatctaccacctgaggaatagaggtatccttgccattaaataacctgttatttctttctttccaaatttcccacgaagttgcaaacc 9907083  T
Q  291 aaagaacctgtaaa 304  Q
    ||||||||||||||    
T  9907082 aaagaacctgtaaa 9907069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 22469546 - 22469421
Alignment:
Q  91 taacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgac 190  Q
    |||||||||| |||| | ||| |||||||| ||||||||||||||| ||||||| || ||||||||||| ||  | ||  |||||||||||||||| |      
T  22469546 taacaattaacctatgctcaaaatggtgaatggactaagccaccaagcatgataattgaagggaagagaagggtatttatccttcaaccacatgaaagcg 22469447  T
Q  191 atcgacttaattttatcaaccacctg 216  Q
    | ||||||||||||||| ||||||||    
T  22469446 agcgacttaattttatctaccacctg 22469421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 12688160 - 12688093
Alignment:
Q  242 aacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattga 309  Q
    |||||||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||||||||||    
T  12688160 aacaacctgttatttcgttctttccagatttcccacatagcagcataccaaataacctgtaaaattga 12688093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 32533064 - 32533134
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    ||||| |||||||||||||||||||||||||||||||||||||  | |||||||  |||||||||| ||||    
T  32533064 gtgaacggactaagccaccaaccatgatagttaaagggaagagtagcaaacttcatcttcaaccacttgaa 32533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 11298598 - 11298657
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||    
T  11298598 ggactaagccaccaaccatgatagttaaagggaagagtgacaaacttcaccttcaaccac 11298657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 18672134 - 18672069
Alignment:
Q  115 ggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| | || ||||| |||||||||||    
T  18672134 ggtgaacggactcagccaccaaccatgatagttaaagggaagag-tagatacttcaccttcaaccac 18672069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 311
Target Start/End: Complemental strand, 11324560 - 11324371
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtagga 221  Q
    |||||||||||||| |||||||| || ||||||||||| | ||| ||||||||||||||| | || |  | | ||||||| || || |||| ||| || |    
T  11324560 ggactaagccaccacccatgataattgaagggaagagaagcaaatttcgccttcaaccacgtaaaagcaagcaacttaatcttgtctaccatctgaagaa 11324461  T
Q  222 tagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattgagc 311  Q
      | |||  ||||||||||||| | ||||||||||||||| || || |||| ||||   |||||| ||||||  ||||| | ||||||||    
T  11324460 ccgagcaaactttgtcattgaagagcctgttatttctttccttccaaattttccacaccgtagcaaaccaaatgacctgaacaattgagc 11324371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 18015755 - 18015798
Alignment:
Q  126 taagccaccaaccatgatagttaaagggaagagatggaaacttc 169  Q
    ||||||||||||||||||||||||||||||||| || |||||||    
T  18015755 taagccaccaaccatgatagttaaagggaagagttgtaaacttc 18015798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 27105244 - 27105180
Alignment:
Q  242 aacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattg 308  Q
    |||||||||||||||| |||||| || ||||||||  ||||||||||||||| |||||| |||||||    
T  27105244 aacaacctgttatttcgttctttccagatttccca--tagtagcataccaaataacctgcaaaattg 27105180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 27147053 - 27146989
Alignment:
Q  242 aacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattg 308  Q
    |||||||||||||||| |||||| || ||||||||  ||||||||||||||| |||||| |||||||    
T  27147053 aacaacctgttatttcgttctttccagatttccca--tagtagcataccaaataacctgcaaaattg 27146989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 34520512 - 34520557
Alignment:
Q  248 ctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||||    
T  34520512 ctgttatttctttctttttatatttcccacgtggtagcaaaccaaa 34520557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 17292772 - 17292836
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    ||||||||||| ||||||||||| || ||||||||||| | ||| || || ||||||||||||||    
T  17292772 ggactaagccatcaaccatgataattgaagggaagagaagcaaatttggcgttcaaccacatgaa 17292836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 29321330 - 29321366
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagag 158  Q
    ||||||||||||||||||| |||||||||||||||||    
T  29321330 ggactaagccaccaaccatcatagttaaagggaagag 29321366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 33548676 - 33548736
Alignment:
Q  231 ctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcatacca 291  Q
    ||||| ||||||| | |||||| ||||||||||||||||||| |||| | |||||||||||    
T  33548676 ctttgccattgaatatcctgttgtttctttcttttcatattttccacatcgtagcatacca 33548736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 7824123 - 7824202
Alignment:
Q  102 ctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||| ||||| |||||||| || ||||||||||| ||||| || || | ||||||||| | | |||||||||||||||||    
T  7824123 ctatgcccaaaatggtgaacgggctaagccaccacccatggtaattgaggggaagagaggaatacttcgccttcaaccac 7824202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 12688311 - 12688220
Alignment:
Q  91 taacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccaca 182  Q
    |||||||||  |||| |||||||| | ||| |||||||||||||| |||||  | |||||||||||||  | ||| ||| ||||||||||||    
T  12688311 taacaattagcctatgcccaacattgcgaacggactaagccaccagccatgtaaattaaagggaagagtagtaaatttctccttcaaccaca 12688220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 277
Target Start/End: Complemental strand, 24639142 - 24639112
Alignment:
Q  247 cctgttatttctttcttttcatatttcccac 277  Q
    |||||||||||||||||||||||||||||||    
T  24639142 cctgttatttctttcttttcatatttcccac 24639112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 2682865 - 2682796
Alignment:
Q  112 catggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||||||| ||||||||||||||||||||| | || ||| ||| ||  ||||| ||| |||||||||||    
T  2682865 catggtgaaaggactaagccaccaaccatgacaattgaagagaatagtaggaaatttcaccttcaaccac 2682796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 10944220 - 10944163
Alignment:
Q  108 ccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaa 165  Q
    |||| |||||| | |||||||||||| ||||||| || |||||||||||||| |||||    
T  10944220 ccaaaatggtgtaaggactaagccacaaaccatggtaattaaagggaagagaaggaaa 10944163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 15117251 - 15117316
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||| ||||||  ||||||||||||||| |||||||||||||  | | ||||| |||||||||||    
T  15117251 gtgaaaggactactccaccaaccatgataattaaagggaagagtagcatacttcaccttcaaccac 15117316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 116 - 308
Target Start/End: Complemental strand, 4889549 - 4889357
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacct 215  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| |  | ||||||||||||||||||||| |    
T  4889549 gtgaatggactaagtcaccacccatgatagttaaagggaagagaagggaacttcgccttgaaccacatgaatgcaagcgacttaattttatcaaccacat 4889450  T
Q  216 gtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattg 308  Q
         || | ||| ||||||  |||||| ||||||||||||||||||||  | ||||| |||||| | ||| |||||| ||| ||||||||||    
T  4889449 aagacattgagcattctttgctattgaataacctgttatttctttctttctaaatttctcacgtaattgcaaaccaaataacttgtaaaattg 4889357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 91 - 303
Target Start/End: Complemental strand, 44675219 - 44675007
Alignment:
Q  91 taacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgac 190  Q
    |||| |||| ||||| ||||||||| | || ||||||||||||||||||||||| || |||||||| || | ||| |||||||||||||||||||| |      
T  44675219 taactattagtctatgcccaacatgataaacggactaagccaccaaccatgataattgaagggaagggaagcaaatttcgccttcaaccacatgaatgca 44675120  T
Q  191 atcgacttaattttatcaaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcatacc 290  Q
    |  | |||||| ||||||||||| || | ||| | ||| |||| | ||||||| |||||||||||| |||||||  | ||||| |||  ||| ||| |||    
T  44675119 agtggcttaatcttatcaaccacttgcacgatcgagcattcttagccattgaataacctgttatttatttctttataaatttctcacacagttgcaaacc 44675020  T
Q  291 aaagaacctgtaa 303  Q
    ||| |||||||||    
T  44675019 aaataacctgtaa 44675007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 315
Target Start/End: Original strand, 34703474 - 34703681
Alignment:
Q  108 ccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatc 207  Q
    ||||||||||||| | ||| ||||||||||||||| ||||||||||||||| || | | ||||||||||||||||| || |  |  |||||||| |||||    
T  34703474 ccaacatggtgaacgaacttagccaccaaccatgaaagttaaagggaagagttgcatatttcgccttcaaccacataaaagtgagggacttaatcttatc 34703573  T
Q  208 aaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaatt 307  Q
    ||||||||| || |  | |||   | | ||  |||| ||| |||||||||||||||| |||||||||||   |||||||||||| | ||| |||||||||    
T  34703574 aaccacctgaagaaccgagcatgttctatctgtgaataacatgttatttctttctttccatatttcccagacagtagcataccagataacttgtaaaatt 34703673  T
Q  308 gagcgaca 315  Q
    || |||||    
T  34703674 gatcgaca 34703681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 12688271 - 12688212
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||    
T  12688271 ggactaagccaccatccatgatagttaaagggaagagttggaaacttcaccttcaaccac 12688212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 309
Target Start/End: Original strand, 22583181 - 22583383
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttat 206  Q
    |||||||| || || |||||||||||||| | ||  ||||| ||||||||||| | ||| |||||||||||||||||||| || |  ||||| || ||||    
T  22583181 cccaacatagtaaatggactaagccaccatctatactagtttaagggaagagaggcaaatttcgccttcaaccacatgaaggaaagtgacttcatcttat 22583280  T
Q  207 caaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaat 306  Q
    | ||||||||||  || | ||| ||||| |||||||| |   |||| |||||||| || || ||||||||| |  ||||| ||||||| ||||| | |||    
T  22583281 ctaccacctgtaacatcgagcattctttatcattgaatattttgttgtttctttccttccaaatttcccacatgatagcaaaccaaagcacctgcataat 22583380  T
Q  307 tga 309  Q
    |||    
T  22583381 tga 22583383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 26260859 - 26260785
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||||||||| || |||||||||||||| |||||||| || ||||||||||| | |||||||||||||||||||    
T  26260859 cccaacatggtaaatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttcaaccac 26260785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 28442151 - 28442210
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  28442151 ggactaagccaccaaccatgatagttaaagggaagagagacaaacttcaccttcaaccac 28442210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 277
Target Start/End: Complemental strand, 9484953 - 9484783
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttat 206  Q
    |||||||| |||||  |||||| ||||||||||||||| || |||||||||||   ||| |||||||||||||||| ||| || || |||||||| ||||    
T  9484953 cccaacattgtgaactgactaaaccaccaaccatgataattgaagggaagagaaacaaatttcgccttcaaccacaagaaggaaattgacttaatcttat 9484854  T
Q  207 caaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccac 277  Q
    | || |  || |  || |  || |||||  ||||||| | | ||||||||||||||||||| |||||||||    
T  9484853 ctactatttgcaatatcgaacattctttaccattgaatatcttgttatttctttcttttcaaatttcccac 9484783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 5411832 - 5411768
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    ||||||||||| ||||||||||||||||||||||||| |  ||||||| ||||||||||| ||||    
T  5411832 ggactaagccaacaaccatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaa 5411768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 48973744 - 48973648
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgta 218  Q
    |||||||||||||| |||||||| ||||||||||||| |  ||||||| |||| |||||| |||| | || | |||||||||| || ||||||||||    
T  48973744 ggactaagccaccacccatgataattaaagggaagagttacaaacttcacctttaaccacttgaaagtcaacaacttaattttgtccaccacctgta 48973648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 272
Target Start/End: Complemental strand, 52626630 - 52626451
Alignment:
Q  91 taacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgac 190  Q
    |||||||||  |||||| ||| ||||| || ||||||||||||||||||||||| || |||||||||||    || || |||| ||||||||||||        
T  52626630 taacaattagcctatacgcaatatggtaaatggactaagccaccaaccatgataattgaagggaagagaaacgaattttgcctccaaccacatgaa--tt 52626533  T
Q  191 atcgacttaattttatcaaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatattt 272  Q
    || | |||||| ||||||| |||||| |  || | ||| |||||||||||  | |  |||||||||||||||||||| ||||    
T  52626532 ataggcttaatcttatcaatcacctgcataatcgagcattctttgtcattagatagtctgttatttctttcttttcagattt 52626451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 51800539 - 51800488
Alignment:
Q  226 gcactctttgtcattgaacaacctgttatttctttcttttcatatttcccac 277  Q
    ||||||||| |||||||| | |||||||||||||||||| ||||||||||||    
T  51800539 gcactctttatcattgaaaatcctgttatttctttctttccatatttcccac 51800488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 301
Target Start/End: Original strand, 25392313 - 25392507
Alignment:
Q  107 cccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttat 206  Q
    |||| |||||| || | |||||||||| ||| |||||| || ||||||| | | | |||||||||||||||||||||  | |  | ||||||||| ||||    
T  25392313 cccatcatggtaaacgaactaagccactaacaatgataattgaagggaaaataagaaaacttcgccttcaaccacatacatgcgagcgacttaatcttat 25392412  T
Q  207 caaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgt 301  Q
    ||| || ||| |  |     || |||||| | ||||| ||| |||||| ||||||||| || |||||||| ||||||||| |||||| |||||||    
T  25392413 caatcatctgcattaccaaacattctttgcctttgaataacttgttatctctttctttccaaatttcccaagtagtagcaaaccaaataacctgt 25392507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 36098606 - 36098660
Alignment:
Q  102 ctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaag 156  Q
    |||| |||||||||||||| |||||||||||||| |||||||| || ||||||||    
T  36098606 ctatgcccaacatggtgaacggactaagccaccagccatgataattgaagggaag 36098660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 40708441 - 40708601
Alignment:
Q  113 atggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaacca 212  Q
    ||||| || ||||||||||||| | ||||||| || |||||||||||   | | ||| ||| |||||||||||| | ||  ||||||||||| || ||||    
T  40708441 atggtaaacggactaagccaccgaacatgataattgaagggaagagaaacatatttcacct-caaccacatgaaagtcagagacttaattttgtctacca 40708539  T
Q  213 cctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcc 274  Q
    |||| |  ||  |||| |||||  |||| || ||| ||||||||||||||||||| ||||||    
T  40708540 cctgcacaatctggcattctttaccattaaataacttgttatttctttcttttcaaatttcc 40708601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 33136223 - 33136283
Alignment:
Q  231 ctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcatacca 291  Q
    |||| |||||||| |||||| | ||| ||||||| ||||||||||||||||||||| ||||    
T  33136223 ctttatcattgaataacctgctgtttatttctttccatatttcccacgtagtagcaaacca 33136283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 48610916 - 48610979
Alignment:
Q  230 tctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||||||||||||| |  ||| ||||||||||||| |||||||||| |  ||||||||||||||    
T  48610916 tctttgtcattgaaaattctgctatttctttctttccatatttcccccacagtagcataccaaa 48610979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 28400594 - 28400552
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagag 158  Q
    ||||| |||||||||||||| |||||||||||||| |||||||    
T  28400594 gtgaatggactaagccaccacccatgatagttaaaaggaagag 28400552  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 31069728 - 31069642
Alignment:
Q  132 accaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgta 218  Q
    |||| |||||||| || || |||||||| | ||| |||||||||||||||||||| || |  |||||||| || || ||||||||||    
T  31069728 accatccatgataatttaatggaagagaggcaaatttcgccttcaaccacatgaaggaaaatgacttaatcttgtctaccacctgta 31069642  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 45718423 - 45718390
Alignment:
Q  125 ctaagccaccaaccatgatagttaaagggaagag 158  Q
    |||||||||||||||||||| |||||||||||||    
T  45718423 ctaagccaccaaccatgataattaaagggaagag 45718390  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 6723835 - 6723871
Alignment:
Q  240 tgaacaacctgttatttctttcttttcatatttccca 276  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  6723835 tgaacaacctgttgtttctttctttccatatttccca 6723871  T

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Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 21523965 - 21523884
Alignment:
Q  110 aacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgaca 191  Q
    ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  21523965 aacatggtgaaggaactaagtcaccaaccatgatagttgaagggaagagatggaaacttcgctttcaaccacatgaatgaca 21523884  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 303
Target Start/End: Original strand, 39435468 - 39435640
Alignment:
Q  130 ccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtaggatagggcac 229  Q
    ||||||||||||||| | ||||| |||||| | ||| |||||||||||||||||||||   |  |||||||| |||||||||||||| |  |  | |||     
T  39435468 ccaccaaccatgataatgaaagg-aagagaagcaaatttcgccttcaaccacatgaactcgagtgacttaatcttatcaaccacctgcaaaaccgagcat 39435566  T
Q  230 tctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaa 303  Q
    |||||||||||||| ||| |||||||||||||||| || ||||| |||  | | ||| ||||||||||||||||    
T  39435567 tctttgtcattgaataacatgttatttctttctttccaaatttctcacacacttgcaaaccaaagaacctgtaa 39435640  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 8462520 - 8462613
Alignment:
Q  123 gactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctg 216  Q
    |||||||||||||||||||||| || ||||||||||| | ||| |||||||||||||||||||| |  |  |||||||| ||||||||||||||    
T  8462520 gactaagccaccaaccatgataattgaagggaagagaagcaaatttcgccttcaaccacatgaatgtgagtgacttaatcttatcaaccacctg 8462613  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 37929212 - 37929141
Alignment:
Q  110 aacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||  ||||| ||| |||||||||||    
T  37929212 aacaaggtgaacggactaagccaccaaccatgatagttaaagggaagagtaggaaatttcaccttcaaccac 37929141  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 306
Target Start/End: Complemental strand, 9060846 - 9060672
Alignment:
Q  132 accaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatcaaccacctgtaggatagggcactc 231  Q
    |||| ||||||||||||| | |||| ||||||||||||||||||||||| |   | || | |||||||||||||||||||||||| |  || | ||| |     
T  9060846 accatccatgatagttaacgtgaagtgatggaaacttcgccttcaaccagaaataagaaagcgacttaattttatcaaccacctgcaaaattgagcaatg 9060747  T
Q  232 tttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaat 306  Q
    |||   |||||| | ||| || ||||| ||||| ||||| |||||| | || ||| |||||||||||||||||||    
T  9060746 tttactattgaagagcctattgtttctctctttccatatctcccacattgttgcaaaccaaagaacctgtaaaat 9060672  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 459200 - 459263
Alignment:
Q  230 tctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcataccaaa 293  Q
    |||||| ||||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||    
T  459200 tctttgccattgaataacctgatatttccttcttttcatatttcccacgcagtagcataccaaa 459263  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 7179036 - 7179100
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    ||||||||||||||| ||||||||||||||||||||| |  ||||||| ||||||||||| ||||    
T  7179036 ggactaagccaccaatcatgatagttaaagggaagagttacaaacttcaccttcaaccacttgaa 7179100  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 10183539 - 10183457
Alignment:
Q  104 atacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaa 186  Q
    ||||||||||| || || |||||||||||||| |||| |||||| ||||||| ||| | ||| |||||||| |||||||||||    
T  10183539 atacccaacatagtaaatggactaagccaccatccattatagtttaagggaaaagaggcaaatttcgcctttaaccacatgaa 10183457  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 38233301 - 38233236
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||| ||||||  ||||||||||||||| |||||||||||||||| | ||||| |||||||||||    
T  38233301 gtgaaaggactagaccaccaaccatgataattaaagggaagagatgcatacttcaccttcaaccac 38233236  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 16840267 - 16840208
Alignment:
Q  249 tgttatttctttcttttcatatttcccacgtagtagcataccaaagaacctgtaaaattg 308  Q
    |||||||||||||||| || |||||||||||||| ||| |||| | ||||||||||||||    
T  16840267 tgttatttctttctttccaaatttcccacgtagttgcaaaccagataacctgtaaaattg 16840208  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 31686422 - 31686493
Alignment:
Q  110 aacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    |||| |||||| |||||||||| ||| ||||| ||||||||||||||||  ||||| ||| |||||||||||    
T  31686422 aacaaggtgaacggactaagccgccacccatggtagttaaagggaagagtaggaaatttctccttcaaccac 31686493  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 41255043 - 41255078
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaaga 157  Q
    ||||||||||||||||||||||||||||||||||||    
T  41255043 ggactaagccaccaaccatgatagttaaagggaaga 41255078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 38685859 - 38685817
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagag 158  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  38685859 gtgaacggactaatccaccaaccatgatagttaaagggaagag 38685817  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 5048605 - 5048545
Alignment:
Q  96 attaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaag 156  Q
    ||||| |||| ||||  |||||||| ||||||||||||||||||||| |||| ||||||||    
T  5048605 attaacctatgcccagtatggtgaacggactaagccaccaaccatgaaagttgaagggaag 5048545  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 33191203 - 33191245
Alignment:
Q  116 gtgaagggactaagccaccaaccatgatagttaaagggaagag 158  Q
    ||||| ||||||||||||||||||||||| || ||||||||||    
T  33191203 gtgaacggactaagccaccaaccatgataattgaagggaagag 33191245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 5752095 - 5752015
Alignment:
Q  101 tctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccac 181  Q
    ||||| ||||| |||||||| |  |||||| |||| |||||||| || | ||||||||| | | |||||||||||||||||    
T  5752095 tctatgcccaaaatggtgaacgagctaagctaccagccatgataattgaggggaagagaggaatacttcgccttcaaccac 5752015  T

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Target: scaffold0047 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 291
Target Start/End: Original strand, 64262 - 64462
Alignment:
Q  91 taacaattaatctatacccaacatggtgaagggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgac 190  Q
    ||||| |||| |||| ||||| |||||||| ||||||||||||||| ||||||| || |||| |||||| ||  | ||| |||||||||||| ||| |      
T  64262 taacagttaacctatgcccaaaatggtgaaaggactaagccaccaagcatgataattgaaggaaagagaagggtatttctccttcaaccacaagaaagcg 64361  T
Q  191 atcgacttaattttatcaaccacctgtaggatagggcactctttgtcattgaacaacctgttatttctttcttttcatatttcccacgtagtagcatacc 290  Q
    |  |||||||||||||| ||||||||  | || |  |  || ||| |||| || |||||||||||||||||||| || ||||| |||||||| ||| |||    
T  64362 agggacttaattttatctaccacctgaggaattgaactatccttgccattaaataacctgttatttctttctttccaaatttcacacgtagttgcaaacc 64461  T
Q  291 a 291  Q
    |    
T  64462 a 64462  T

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Target: scaffold0204 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 24573 - 24489
Alignment:
Q  124 actaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaaccacatgaacgacatcgacttaattttatca 208  Q
    ||||| |||||||| |||||  || ||||||||||| ||||| |||||||||||||||||||| |  | ||||||||||||||||    
T  24573 actaaaccaccaactatgatgattgaagggaagagaaggaaatttcgccttcaaccacatgaaagttagcgacttaattttatca 24489  T

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Target: scaffold0225 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 6598 - 6540
Alignment:
Q  122 ggactaagccaccaaccatgatagttaaagggaagagatggaaacttcgccttcaacca 180  Q
    ||||| ||||||||||||||||||||||||||||||| || ||||||| |||| |||||    
T  6598 ggacttagccaccaaccatgatagttaaagggaagagttgtaaacttcacctttaacca 6540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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