View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_low_29 (Length: 334)

Name: NF12740_low_29
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_low_29
NF12740_low_29
[»] chr3 (22 HSPs)
chr3 (3-168)||(34627723-34627888)
chr3 (225-320)||(34627572-34627666)
chr3 (1-121)||(50559101-50559220)
chr3 (1-130)||(6178305-6178434)
chr3 (9-121)||(13348023-13348135)
chr3 (5-116)||(12762583-12762694)
chr3 (47-116)||(54007570-54007639)
chr3 (64-121)||(11075265-11075322)
chr3 (47-116)||(42997393-42997462)
chr3 (56-121)||(51305455-51305520)
chr3 (9-116)||(3281610-3281717)
chr3 (34-90)||(44445389-44445445)
chr3 (3-116)||(35299768-35299879)
chr3 (3-45)||(48353061-48353103)
chr3 (56-118)||(52564541-52564603)
chr3 (1-43)||(52714796-52714838)
chr3 (55-124)||(23600709-23600778)
chr3 (1-114)||(55361129-55361242)
chr3 (1-121)||(5114140-5114260)
chr3 (4-116)||(26488174-26488286)
chr3 (20-116)||(34532270-34532366)
chr3 (1-121)||(35376970-35377090)
[»] chr1 (18 HSPs)
chr1 (1-116)||(31975054-31975167)
chr1 (20-121)||(19947633-19947734)
chr1 (1-116)||(6949874-6949989)
chr1 (1-116)||(43367795-43367910)
chr1 (54-116)||(29706597-29706659)
chr1 (1-43)||(9988014-9988056)
chr1 (56-118)||(51436662-51436724)
chr1 (56-117)||(43769736-43769797)
chr1 (37-89)||(1863091-1863143)
chr1 (1-121)||(9566849-9566969)
chr1 (1-121)||(18434857-18434977)
chr1 (56-116)||(21433294-21433354)
chr1 (62-90)||(27470134-27470162)
chr1 (60-116)||(31433611-31433667)
chr1 (92-124)||(36954800-36954832)
chr1 (9-116)||(38713640-38713747)
chr1 (1-77)||(44519084-44519160)
chr1 (1-121)||(49065253-49065373)
[»] chr5 (6 HSPs)
chr5 (1-121)||(21943585-21943704)
chr5 (1-90)||(33958179-33958268)
chr5 (32-121)||(33655302-33655392)
chr5 (1-63)||(39054649-39054711)
chr5 (1-121)||(5168245-5168365)
chr5 (1-79)||(35567563-35567641)
[»] chr8 (16 HSPs)
chr8 (29-114)||(40517348-40517433)
chr8 (60-118)||(24795370-24795428)
chr8 (17-121)||(39856116-39856220)
chr8 (57-118)||(6182346-6182407)
chr8 (3-86)||(6015964-6016047)
chr8 (1-80)||(24798287-24798366)
chr8 (1-83)||(2020608-2020690)
chr8 (1-43)||(6440144-6440186)
chr8 (4-116)||(25018434-25018545)
chr8 (2-116)||(38958445-38958559)
chr8 (3-69)||(44596354-44596420)
chr8 (4-121)||(13106545-13106662)
chr8 (1-116)||(27854662-27854775)
chr8 (9-121)||(29025330-29025442)
chr8 (1-81)||(38675666-38675746)
chr8 (1-41)||(43285931-43285971)
[»] chr7 (19 HSPs)
chr7 (9-121)||(39497190-39497302)
chr7 (1-68)||(4292490-4292557)
chr7 (47-114)||(37845259-37845326)
chr7 (58-116)||(20337430-20337488)
chr7 (38-123)||(38944896-38944981)
chr7 (1-121)||(35072251-35072371)
chr7 (1-121)||(41018726-41018846)
chr7 (70-121)||(39110994-39111045)
chr7 (1-43)||(31445380-31445422)
chr7 (2-80)||(35822904-35822982)
chr7 (1-43)||(40854621-40854663)
chr7 (1-43)||(41989709-41989751)
chr7 (3-121)||(43159464-43159581)
chr7 (9-43)||(49128947-49128981)
chr7 (56-116)||(3343224-3343283)
chr7 (1-81)||(26018103-26018183)
chr7 (1-116)||(33775001-33775117)
chr7 (1-121)||(35098592-35098712)
chr7 (1-116)||(44649222-44649335)
[»] chr4 (22 HSPs)
chr4 (1-90)||(38380996-38381085)
chr4 (18-121)||(39654903-39655006)
chr4 (1-121)||(336696-336816)
chr4 (56-116)||(18767977-18768037)
chr4 (1-80)||(27051016-27051095)
chr4 (1-79)||(12387596-12387674)
chr4 (47-121)||(34616669-34616743)
chr4 (56-116)||(14603574-14603634)
chr4 (29-116)||(46038753-46038838)
chr4 (1-121)||(50889962-50890082)
chr4 (2-80)||(1627488-1627566)
chr4 (1-43)||(7632428-7632470)
chr4 (1-43)||(16019539-16019581)
chr4 (1-43)||(19232100-19232142)
chr4 (56-114)||(24990232-24990290)
chr4 (1-79)||(37997316-37997394)
chr4 (1-43)||(50721711-50721753)
chr4 (47-80)||(40590707-40590740)
chr4 (56-116)||(1140727-1140787)
chr4 (32-80)||(11669176-11669223)
chr4 (56-116)||(27371258-27371318)
chr4 (1-49)||(36123420-36123468)
[»] chr2 (16 HSPs)
chr2 (1-89)||(44977420-44977508)
chr2 (1-80)||(36774601-36774680)
chr2 (3-121)||(1907652-1907770)
chr2 (56-118)||(43520975-43521037)
chr2 (4-121)||(7663956-7664072)
chr2 (56-116)||(20532356-20532416)
chr2 (1-116)||(8427615-8427730)
chr2 (1-132)||(32477394-32477525)
chr2 (1-116)||(39147828-39147943)
chr2 (9-116)||(14233612-14233720)
chr2 (56-121)||(5054061-5054126)
chr2 (4-73)||(18300823-18300892)
chr2 (37-121)||(3097750-3097834)
chr2 (56-116)||(14498900-14498960)
chr2 (1-49)||(29449274-29449322)
chr2 (56-116)||(36625205-36625265)
[»] scaffold0087 (1 HSPs)
scaffold0087 (47-121)||(53250-53324)
[»] scaffold0005 (1 HSPs)
scaffold0005 (56-116)||(213744-213804)
[»] chr6 (8 HSPs)
chr6 (10-114)||(20998041-20998145)
chr6 (1-121)||(26595411-26595531)
chr6 (20-113)||(32295305-32295400)
chr6 (1-116)||(30956134-30956249)
chr6 (66-113)||(34084526-34084573)
chr6 (9-117)||(5028159-5028267)
chr6 (1-116)||(5522533-5522646)
chr6 (9-121)||(14818002-14818114)
[»] scaffold0184 (1 HSPs)
scaffold0184 (1-121)||(16678-16796)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-121)||(56048-56166)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 34627888 - 34627723
Alignment:
Q  3 attatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataa 102  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||  |||||||||||    
T  34627888 attatatttttactttctctctttactgctttgatttttgtataaatatcttattttctttgtaaatttatggttgtcttataagttatcataaaaataa 34627789  T
Q  103 ttgttcaaataacataacttttctataaatcatggtacgtttaaactcttacactgctttacattg 168  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34627788 ttgttcaaataacacaacttttctataaatcatggcacgtttaaactcttacactgctttacattg 34627723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 34627666 - 34627572
Alignment:
Q  225 atagaaagggaaacagggatctcttaaaaaccaatccattcaagcatcacccggatttggcgtaaatcccacttgattgcttttacattccacagg 320  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34627666 atagaaagggaaacaaggatctcttaaaaaccaatccattcaagcatca-ccggatttggcgtaaatcccacttgattgcttttacattccacagg 34627572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 50559220 - 50559101
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||||||| || || |||||||||| ||| |||| ||| ||||||||||||||||||||||||| || || ||  || | ||||    
T  50559220 acattatgtttttactttctctctctattgttttgatttttataccaatacctt-ttttctttataaatttatggttgtcataaaaattatcacataaat 50559122  T
Q  101 aattgttcaaataacataact 121  Q
    | |||||||||||||| ||||    
T  50559121 agttgttcaaataacacaact 50559101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 6178434 - 6178305
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||||||| || |||||||||||||||   |||| |   ||||||||| |||||||||||||| |   |||||| |||||||||    
T  6178434 acattatgtttttactttctctctctattgctttgatttttgtgtcaataccactttttctttacaaatttatggttgtatcgaaagttgtcataaaaat 6178335  T
Q  101 aattgttcaaataacataacttttctataa 130  Q
      |||||||||||||| |||| || |||||    
T  6178334 ggttgttcaaataacacaactcttttataa 6178305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 13348135 - 13348023
Alignment:
Q  9 tttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttc 108  Q
    |||||||||||||||| || ||||||| ||||||||  |||| || ||||||||| |||| || ||||||||  | |||||| |||| ||||   |||||    
T  13348135 tttttaccttctctctctattgctttggtttttgtatcaatacctcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttc 13348036  T
Q  109 aaataacataact 121  Q
    |||||||||||||    
T  13348035 aaataacataact 13348023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 12762694 - 12762583
Alignment:
Q  5 tatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataatt 104  Q
    ||||||||||  ||||||||||| | |||||||||||||   |||| ||  |||||||| ||||||||||||||||  |||| ||| |||  |||| |||    
T  12762694 tatatttttattttctctctttattactttgatttttgtgtcaataactatttttctttgtaaatttatggttgtcccataaattgtcatgtaaatgatt 12762595  T
Q  105 gttcaaataaca 116  Q
    ||||||||||||    
T  12762594 gttcaaataaca 12762583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 54007570 - 54007639
Alignment:
Q  47 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||  ||||||||||||||||||||||||||||||||||| |||| | ||  | ||||||||||||    
T  54007570 aatatctatttttctttataaatttatggttgtcttataagttgtcatacagatggtcgttcaaataaca 54007639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 11075322 - 11075265
Alignment:
Q  64 ataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 121  Q
    |||||||||||||||||| | |||||| |||| ||||  |||||||||||||||||||    
T  11075322 ataaatttatggttgtctcaaaagttgtcatacaaatggttgttcaaataacataact 11075265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 42997393 - 42997462
Alignment:
Q  47 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||||||||||||||| | || ||||||||||| |||||| |||| |||| | |||| ||||||||    
T  42997393 aatatcttattttctttatacaattttggttgtcttaaaagttgtcatataaatgaatgtttaaataaca 42997462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 51305520 - 51305455
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 121  Q
    |||||||| ||||||||||| ||| | | |||||| ||||||||| |||||||||||| |||||||    
T  51305520 ttttctttgtaaatttatggatgtataaaaagttgtcataaaaatgattgttcaaatatcataact 51305455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 3281717 - 3281610
Alignment:
Q  9 tttttaccttctctctttactgctttgatttttgtacaaatatct-tattttctttataaatttatggttgtcttataagttgacataaaaataattgtt 107  Q
    ||||||| || |||||||| ||||||| |||||||| ||||| || | |||||||| |||||| ||||||||| | ||||||||||   ||||  |||||    
T  3281717 tttttactttatctctttattgctttggtttttgtataaatacctattttttctttgtaaatt-atggttgtcatgtaagttgacaaccaaatggttgtt 3281619  T
Q  108 caaataaca 116  Q
    |||||||||    
T  3281618 caaataaca 3281610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 44445389 - 44445445
Alignment:
Q  34 tgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttg 90  Q
    |||||||||| ||||||||| |||||||||||||| || |||||||| || ||||||    
T  44445389 tgatttttgtgcaaatatctcattttctttataaaattttggttgtcataaaagttg 44445445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 35299879 - 35299768
Alignment:
Q  3 attatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataa 102  Q
    ||||||||||||  |||||||| |  |||||||||||||||   |||| || |||||||||||||||| || |||||| || || ||| ||| |||||      
T  35299879 attatatttttattttctctctat--tgctttgatttttgtgtcaatacctcattttctttataaattcattgttgtcctaaaaattgtcattaaaatgc 35299782  T
Q  103 ttgttcaaataaca 116  Q
    ||||| ||||||||    
T  35299781 ttgttgaaataaca 35299768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 48353061 - 48353103
Alignment:
Q  3 attatatttttaccttctctctttactgctttgatttttgtac 45  Q
    ||||||||||||| |||||||| || |||||||||||||||||    
T  48353061 attatatttttactttctctctctattgctttgatttttgtac 48353103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 52564603 - 52564541
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacata 118  Q
    |||||||| ||||| ||||||||||  |||||||| |||| ||||  ||||||||||||||||    
T  52564603 ttttctttgtaaatctatggttgtcccataagttgtcatagaaatggttgttcaaataacata 52564541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 52714796 - 52714838
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  52714796 acattatatttttactttctctctctattgctttgatttttgt 52714838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 23600709 - 23600778
Alignment:
Q  55 attttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataactttt 124  Q
    |||||||||||||| || ||||||||| | |||||| |||| ||||   ||||||||||||| |||||||    
T  23600709 attttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactttt 23600778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 55361242 - 55361129
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||||||| || ||||||| |||||||   ||||  | ||||||||| |||||  |||||||||  |||||||  |||  ||||    
T  55361242 acattatttttttactttctctctctattgctttggtttttgtgtcaatacttcattttctttgtaaatcaatggttgtcacataagttttcattcaaat 55361143  T
Q  101 aattgttcaaataa 114  Q
    | ||||||||||||    
T  55361142 agttgttcaaataa 55361129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5114140 - 5114260
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||||||| || |||||||||||||||   | || || ||||||||| |||| || || ||||| || || ||| || | ||||    
T  5114140 acattatctttttactttctctctctattgctttgatttttgtgtcactacctcattttctttgtaaaattttgattgtcataaaaattgtcacataaat 5114239  T
Q  101 aattgttcaaataacataact 121  Q
    |  ||||||||||||| ||||    
T  5114240 agatgttcaaataacacaact 5114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 26488286 - 26488174
Alignment:
Q  4 ttatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataat 103  Q
    |||| ||||||| ||||||||||| ||||||| |||| |||  ||||| |  |||| ||| ||||| ||||||||| ||| |||||   ||| ||||  |    
T  26488286 ttatgtttttactttctctctttattgctttggttttcgtaacaatatttagttttatttgtaaatctatggttgtattaaaagttattatataaatggt 26488187  T
Q  104 tgttcaaataaca 116  Q
    |||||||||||||    
T  26488186 tgttcaaataaca 26488174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 34532270 - 34532366
Alignment:
Q  20 tctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||| |||||| |||||||||  ||| |||  |||||||| ||||| ||||||||||  |||| ||  |||  |||| |||||||||||||||    
T  34532270 tctctttattgctttaatttttgtatcaatgtctacttttctttgtaaatatatggttgtcacataaattatcatgtaaatgattgttcaaataaca 34532366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 35377090 - 35376970
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||| ||| || ||||||||||||||| | ||||  | ||||||||| |||| || ||||||||  | |||||| |||  ||||    
T  35377090 acattatgtttttactttctttctctattgctttgatttttgtgccaatacatcattttctttgtaaaattttggttgtcacaaaagttgtcatctaaat 35376991  T
Q  101 aattgttcaaataacataact 121  Q
       ||||||||||||| ||||    
T  35376990 ggatgttcaaataacacaact 35376970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31975054 - 31975167
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||||||||||||||| || |||||||||||||  |||| || ||||||||| ||||| ||| |||||||||||||||  ||| |||||    
T  31975054 acattatgtttttaccttctctctttattg-tttgatttttgtattaatacctcattttctttgtaaatctatagttgtcttataagttatcat-aaaat 31975151  T
Q  101 aattgttcaaataaca 116  Q
    | ||||||||||||||    
T  31975152 agttgttcaaataaca 31975167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 19947734 - 19947633
Alignment:
Q  20 tctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataa 119  Q
    ||||| || ||||||| ||||||| | |||| ||  ||||||||||||| || ||||||||| | |||||| |||| |||||| ||||||||||||| ||    
T  19947734 tctctctattgctttggtttttgtcccaatacctccttttctttataaaattttggttgtctcaaaagttgtcatataaataaatgttcaaataacacaa 19947635  T
Q  120 ct 121  Q
    ||    
T  19947634 ct 19947633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 6949989 - 6949874
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||  |||||||| |||||||||| |||| |||  |||||||  ||||||||||||||||||  || || || |||||| || | ||||    
T  6949989 acattatgtttttaatttctctctctactgctttgtttttcgtatcaatatctacttttctttataaatttatatttatcgtaaaagttgtcacacaaat 6949890  T
Q  101 aattgttcaaataaca 116  Q
    | ||||||| ||||||    
T  6949889 agttgttcagataaca 6949874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 43367910 - 43367795
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| | || |||||| || ||||||||| ||  |||||| |  |||||||| |||||||||||||||  || |||||| || | ||||    
T  43367910 acattatgtttttacttactttctttattgatttgattttcgtgtaaatatttatttttctttgtaaatttatggttgttctaaaagttgtcacacaaat 43367811  T
Q  101 aattgttcaaataaca 116  Q
     |||||||||||||||    
T  43367810 gattgttcaaataaca 43367795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 29706659 - 29706597
Alignment:
Q  54 tattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||||| ||||||||||||| ||||| |||||| || | |||| |||||||||||||||    
T  29706659 tattttctttgtaaatttatggttatcttaaaagttgtcacagaaatgattgttcaaataaca 29706597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9988014 - 9988056
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  9988014 acattatatttttactttctctctctattgctttgatttttgt 9988056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 51436724 - 51436662
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacata 118  Q
    |||||||| ||||| |||||||||| ||||||||| ||   |||| |||||||||||||||||    
T  51436724 ttttctttgtaaatctatggttgtcatataagttgtcaaccaaattattgttcaaataacata 51436662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 43769736 - 43769797
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacat 117  Q
    ||||||||||||||| |||||||||| |||||||| ||   |||| ||| ||||||||||||    
T  43769736 ttttctttataaattaatggttgtctcataagttgtcaaccaaatgattattcaaataacat 43769797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 1863091 - 1863143
Alignment:
Q  37 tttttgtacaaatatcttattttctttataaatttatggttgtcttataagtt 89  Q
    ||||||||  |||||||  |||||||||||||||||||||||| | |||||||    
T  1863091 tttttgtattaatatctacttttctttataaatttatggttgtttcataagtt 1863143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 9566969 - 9566849
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| ||||| || || ||||||| |||||||   |||| | |||||||| | |||| || ||||||||| | |||||| |||| || |    
T  9566969 acattatgtttttactttctcactctattgctttggtttttgtgtcaataccctattttctatgtaaaattttggttgtctcaaaagttgtcatataatt 9566870  T
Q  101 aattgttcaaataacataact 121  Q
     | ||||||||||||| ||||    
T  9566869 gaatgttcaaataacacaact 9566849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 18434857 - 18434977
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| ||||||||||| || |||||||||||| | ||||  | |||||||||  ||| || ||||||||  | |||||| |||  ||||    
T  18434857 acattatgtttttactttctctctttattgttttgatttttgtgccaatacatcattttctttgcaaaattttggttgtcacaaaagttgtcatctaaat 18434956  T
Q  101 aattgttcaaataacataact 121  Q
    |  | ||||||||||| ||||    
T  18434957 agattttcaaataacacaact 18434977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 21433354 - 21433294
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    ||||||||| ||||||||||||||| |  |||||| || | |||| |||||||||||||||    
T  21433354 ttttctttacaaatttatggttgtcctgaaagttgtcacacaaatgattgttcaaataaca 21433294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 27470134 - 27470162
Alignment:
Q  62 ttataaatttatggttgtcttataagttg 90  Q
    |||||||||||||||||||||||||||||    
T  27470134 ttataaatttatggttgtcttataagttg 27470162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 31433611 - 31433667
Alignment:
Q  60 ctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||| ||||| ||||||||||| |||||||  |||| ||||| ||||||||||||||    
T  31433611 ctttgtaaatctatggttgtctcataagttatcatacaaatagttgttcaaataaca 31433667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 36954800 - 36954832
Alignment:
Q  92 cataaaaataattgttcaaataacataactttt 124  Q
    ||||||||| |||||||||||||||||||||||    
T  36954800 cataaaaatgattgttcaaataacataactttt 36954832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 38713640 - 38713747
Alignment:
Q  9 tttttaccttctctctttactgctttgatttttgtacaaata-tcttattttctttataaatttatggttgtcttataagttgacataaaaataattgtt 107  Q
    ||||||| || |||||||| |||||||||||| || ||||||  | | ||||||||||||| ||||| ||||| ||||||||| ||   |||| ||| ||    
T  38713640 tttttactttatctctttattgctttgattttcgtgcaaatacccattttttctttataaa-ttatgattgtcatataagttgtcagctaaatgattttt 38713738  T
Q  108 caaataaca 116  Q
    |||||||||    
T  38713739 caaataaca 38713747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44519160 - 44519084
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggtt 77  Q
    ||||||| ||||||| |||||||| || ||||||||||||||| | |||| || |||| |||| |||| || |||||    
T  44519160 acattatctttttactttctctctctattgctttgatttttgtgctaatacctcatttcctttgtaaaattttggtt 44519084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 49065373 - 49065253
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||||||| || ||||||| ||||||| | ||||  | ||||||||| |||| || ||||| ||||  || ||| |||| ||||    
T  49065373 acattatgtttttactttctctctctattgctttggtttttgtgccaatacttcattttctttgtaaaattttggttatctttaaaattgtcatataaat 49065274  T
Q  101 aattgttcaaataacataact 121  Q
    |  | ||||||||||| ||||    
T  49065273 agatattcaaataacacaact 49065253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 21943704 - 21943585
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||  ||||||||||| ||||||||||||| |   ||||||||||||||||| |||| ||||||||||| | ||||||| ||| |||||    
T  21943704 acattatgtttttattttctctctttattgctttgatttttctgtcaatatcttattttctttgtaaa-ttatggttgtcatgtaagttgtcattaaaat 21943606  T
Q  101 aattgttcaaataacataact 121  Q
    | ||||| |||||||| ||||    
T  21943605 agttgtttaaataacacaact 21943585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33958268 - 33958179
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttg 90  Q
    ||||||||||||||| |||||||| || ||||||| |||||||   |||||||  |||||||| |||||||||||||||| || ||||||    
T  33958268 acattatatttttactttctctctctattgctttggtttttgtgtcaatatctctttttctttgtaaatttatggttgtcataaaagttg 33958179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 33655392 - 33655302
Alignment:
Q  32 tttgatttttgta-caaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 121  Q
    |||| |||||||| |||||| || |||||||||||||||||||||||||   | |||||  |||||||||| || ||||||||||| ||||    
T  33655392 tttggtttttgtatcaaatacctcattttctttataaatttatggttgtaccaaaagttatcataaaaatagttattcaaataacacaact 33655302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39054649 - 39054711
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttcttt 63  Q
    ||||||| ||||||| |||||||| || ||||||||||||||| ||||||| | |||||||||    
T  39054649 acattatgtttttactttctctctctattgctttgatttttgtgcaaatatatcattttcttt 39054711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5168245 - 5168365
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||||||| || ||||||||||||||| | | || || ||||||||| |||| || | ||||||  | |||||| |||| | ||    
T  5168245 acattatctttttactttctctctctattgctttgatttttgtgccactacctcattttctttgtaaaattttagttgtcacaaaagttgtcatatatat 5168344  T
Q  101 aattgttcaaataacataact 121  Q
     | ||||||||||||| ||||    
T  5168345 gaatgttcaaataacacaact 5168365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 35567563 - 35567641
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgt 79  Q
    ||||||||||||||| |||||||| || |||||||| ||||||   || | |||||||| ||| |||| ||||||||||    
T  35567563 acattatatttttactttctctctctattgctttgaattttgtgtcaaaaccttattttatttgtaaaattatggttgt 35567641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 40517348 - 40517433
Alignment:
Q  29 tgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataa 114  Q
    |||||||||||| ||   |||||||  |||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||    
T  40517348 tgctttgattttcgtgtcaatatctacttttctttgtaaatttatggttgtcttataagatgtcataaaaatgattgttcaaataa 40517433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 24795370 - 24795428
Alignment:
Q  60 ctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacata 118  Q
    |||||||||||||||||||||| |||||||| || | ||||| ||||||||||||||||    
T  24795370 ctttataaatttatggttgtctcataagttgtcaaacaaatagttgttcaaataacata 24795428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 39856116 - 39856220
Alignment:
Q  17 ttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||| || |||||||||||||||   |||||||  |||||||| | |||| ||| |||||||| |||||  ||| |||||| ||||||||||||||    
T  39856116 ttctctctctattgctttgatttttgtgtcaatatctatttttctttgttaattcatgattgtcttaaaagttatcattaaaatagttgttcaaataaca 39856215  T
Q  117 taact 121  Q
     ||||    
T  39856216 caact 39856220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 6182346 - 6182407
Alignment:
Q  57 tttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacata 118  Q
    ||||||||||||||||| ||||||  |||| ||| |||| ||||| ||||||||||||||||    
T  6182346 tttctttataaatttattgttgtccaataaattgtcatacaaatagttgttcaaataacata 6182407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 6015964 - 6016047
Alignment:
Q  3 attatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataa 86  Q
    ||||||||||||  || ||| |||| ||||||||||||| ||  ||||| | |||||||||||||||| |||||| ||| ||||    
T  6015964 attatatttttaatttatctttttattgctttgatttttatatcaatatttaattttctttataaattcatggttatctcataa 6016047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 24798366 - 24798287
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtc 80  Q
    ||||||||||||||| |||||| | || || |||||||||| ||  |||||||  ||||||||||  |||||||||||||    
T  24798366 acattatatttttactttctctttctattgttttgatttttatatcaatatctctttttctttattgatttatggttgtc 24798287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2020608 - 2020690
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtctta 83  Q
    ||||||||||||||| || |||||||| |  |||||||||||||  |||||||   ||||||| |||||||||| || |||||    
T  2020608 acattatatttttactttatctctttattattttgatttttgtattaatatctgtctttctttgtaaatttatgattatctta 2020690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6440144 - 6440186
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||||||||||| ||||||||||  |||||||||||||||    
T  6440144 acattatatttttactttctctctttcttgctttgatttttgt 6440186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 25018434 - 25018545
Alignment:
Q  4 ttatatttttaccttctctctttactgctttgatttttgtacaaatatctt-attttctttataaatttatggttgtcttataagttgacataaaaataa 102  Q
    |||||||||||  || |||||||| || |||| |||||||   |||||||| | ||| ||| |||||||||| ||||| ||||| ||| | || ||||||    
T  25018434 ttatattttta--ttatctctttattgttttggtttttgtgttaatatctttaatttttttgtaaatttatgattgtcatataaattgtcttacaaataa 25018531  T
Q  103 ttgttcaaataaca 116  Q
    ||||||||||||||    
T  25018532 ttgttcaaataaca 25018545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 38958559 - 38958445
Alignment:
Q  2 cattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaata 101  Q
    |||||| ||||||| |||||| |||| ||||||| |||||||    ||| || ||||||||| |||||| ||||||||   | || ||| ||| |||||     
T  38958559 cattatgtttttactttctctttttattgctttggtttttgtgttcatacctcattttctttgtaaattgatggttgttccaaaaattgtcattaaaatg 38958460  T
Q  102 attgttcaaataaca 116  Q
    |||||||||||||||    
T  38958459 attgttcaaataaca 38958445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 44596354 - 44596420
Alignment:
Q  3 attatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaat 69  Q
    ||||||||||||| ||||||||||| | |||||| |||||||  | ||  |||||||||||||||||    
T  44596354 attatatttttactttctctctttattactttgaattttgtatcagtactttattttctttataaat 44596420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 13106545 - 13106662
Alignment:
Q  4 ttatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataat 103  Q
    |||||||||| | |||||||| || ||||||| |||||||   |||| ||  |||||||| |||||||||||||||  || |||||| ||   ||||  |    
T  13106545 ttatatttttgctttctctctctattgctttgctttttgtgtcaatacctctttttctttgtaaatttatggttgttataaaagttgtcacctaaatggt 13106644  T
Q  104 tgttcaaataacataact 121  Q
    ||||||||||||| ||||    
T  13106645 tgttcaaataacacaact 13106662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 27854775 - 27854662
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||||||| |  || |||||||||||| | ||||| | ||||||||| |||| || |  |||||||| |||||  ||| |||||    
T  27854775 acattatgtttttactttctctctat--tgttttgatttttgtgccaatatttaattttctttgtaaaattttaattgtcttaaaagttatcatgaaaat 27854678  T
Q  101 aattgttcaaataaca 116  Q
     | |||||||||||||    
T  27854677 gaatgttcaaataaca 27854662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 29025330 - 29025442
Alignment:
Q  9 tttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttc 108  Q
    |||||||||||||||| || ||||||| |||||||   |||| || ||||||||| |||| || ||||||||  | |||||| |||| ||||   ||||     
T  29025330 tttttaccttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttt 29025429  T
Q  109 aaataacataact 121  Q
    |||||||| ||||    
T  29025430 aaataacacaact 29025442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38675666 - 38675746
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtct 81  Q
    ||||||||||||||| |||||||| || | ||||| ||||||| | ||||  |  |||||||| |||| ||||||||||||    
T  38675666 acattatatttttactttctctctctatttctttggtttttgtgccaatacatacttttctttttaaagttatggttgtct 38675746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43285971 - 43285931
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgattttt 41  Q
    ||||||||||||||| ||||||||||| ||||||| |||||    
T  43285971 acattatatttttactttctctctttattgctttggttttt 43285931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 39497302 - 39497190
Alignment:
Q  9 tttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttc 108  Q
    ||||||| ||||||||||| ||||||| ||||||||| | ||| | ||||||||| || ||| ||||||||||||||||||  |||  ||||  ||||||    
T  39497302 tttttactttctctctttattgctttggtttttgtaccattatttcattttctttgtacattaatggttgtcttataagttatcattgaaatggttgttc 39497203  T
Q  109 aaataacataact 121  Q
    |||||||| ||||    
T  39497202 aaataacacaact 39497190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4292490 - 4292557
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaa 68  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||| ||||| | ||||||||| ||||    
T  4292490 acattatgtttttactttctctctctattgctttgatttttgtaccaatatttaattttctttgtaaa 4292557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 37845259 - 37845326
Alignment:
Q  47 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataa 114  Q
    |||||||  ||||||||||||||||||| |||| |||||||||  |||| ||||||||||| ||||||    
T  37845259 aatatctacttttctttataaatttatgattgttttataagttatcatacaaataattgtttaaataa 37845326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 20337430 - 20337488
Alignment:
Q  58 ttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||| ||||||||||||| ||| |||||||| |||| ||||| ||||||||||||||    
T  20337430 ttctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataaca 20337488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 38944896 - 38944981
Alignment:
Q  38 ttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataacttt 123  Q
    |||||||| ||||| ||||||||||| |||| || || |||||||| |||||| |||| |||| | |||| |||||||| ||||||    
T  38944896 ttttgtactaatattttattttctttgtaaaattttgattgtcttaaaagttgtcatataaatgaatgtttaaataacacaacttt 38944981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 35072371 - 35072251
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||| ||||||||| |||||| | || |||||||||||||||   ||| ||| |||||||||||||| || ||||||| | | |||||| |||| ||||    
T  35072371 acattctatttttactttctctttctattgctttgatttttgtgtcaatgtctcattttctttataaaattttggttgtttcaaaagttgtcatataaat 35072272  T
Q  101 aattgttcaaataacataact 121  Q
       |||||| |||||| ||||    
T  35072271 ggatgttcagataacacaact 35072251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 41018726 - 41018846
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||||||||||| |||||||| || | ||||| |||||||   |||| ||  |||||||| |||||||||| ||||| || |||||| ||   ||||    
T  41018726 acattatatttttactttctctctctattactttggtttttgtgttaatacctctttttctttgtaaatttatgattgtcataaaagttgtcacctaaat 41018825  T
Q  101 aattgttcaaataacataact 121  Q
    | || ||||||||||| ||||    
T  41018826 agttattcaaataacacaact 41018846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 39110994 - 39111045
Alignment:
Q  70 ttatggttgtcttataagttgacataaaaataattgttcaaataacataact 121  Q
    ||||| |||||| |||||||| ||| ||||||||||||||||||||| ||||    
T  39110994 ttatgattgtctcataagttgtcattaaaataattgttcaaataacacaact 39111045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31445380 - 31445422
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  31445380 acattatatttttactttctctctctattgctttgatttttgt 31445422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 35822982 - 35822904
Alignment:
Q  2 cattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtc 80  Q
    |||||||||||||| |||||||| || ||||||||||||||| | ||||  |  |||||||| ||||  ||||||||||    
T  35822982 cattatatttttactttctctctctattgctttgatttttgtgccaatacatatttttctttgtaaaaatatggttgtc 35822904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 40854663 - 40854621
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  40854663 acattatatttttactttctctctctattgctttgatttttgt 40854621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41989751 - 41989709
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||    
T  41989751 acattatatttttactttctctctttattgctttggtttttgt 41989709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 43159581 - 43159464
Alignment:
Q  3 attatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataa 102  Q
    ||||||||||||| |||||||| || |||||||  |||||||  |||| ||  |||||||| |||||||||||||||| |  |||||| ||   ||||      
T  43159581 attatatttttactttctctctctattgctttg-gttttgtatcaatacctctttttctttgtaaatttatggttgtcatcaaagttgtcacctaaatgg 43159483  T
Q  103 ttgttcaaataacataact 121  Q
    |||||||||||||| ||||    
T  43159482 ttgttcaaataacacaact 43159464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 49128981 - 49128947
Alignment:
Q  9 tttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||| |||||||||||||||||||||||||||    
T  49128981 tttttactttctctctttactgctttgatttttgt 49128947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 3343283 - 3343224
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    ||||||||||||||| |||||||||||| |||||| ||   ||||| ||||||||||||||    
T  3343283 ttttctttataaatt-atggttgtcttaaaagttgtcaatcaaatagttgttcaaataaca 3343224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 26018103 - 26018183
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtct 81  Q
    ||||||||||||||| |||||||| || | |||| |||||| ||||||||  |  |||||||||||||  |||| ||||||    
T  26018103 acattatatttttactttctctctctattactttaatttttatacaaatacatacttttctttataaaaatatgattgtct 26018183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 33775001 - 33775117
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttc-tttataaatttatggttgtcttataagttgacataaaaa 99  Q
    ||||||| ||||||| || | ||| || ||| ||||||||||||| |||| ||  ||||| |||||||||| |||||||||  |||||||| ||   |||    
T  33775001 acattatgtttttactttatttctctattgcattgatttttgtaccaatacctacttttcttttataaattcatggttgtcaaataagttgtcaatcaaa 33775100  T
Q  100 taattgttcaaataaca 116  Q
      |||||||||||||||    
T  33775101 cgattgttcaaataaca 33775117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 35098712 - 35098592
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||| ||||||||| |||||| | || |||||||||||||||   ||| ||| ||||||| |||||| || ||||||| | | |||||| |||| ||||    
T  35098712 acattctatttttactttctctttctattgctttgatttttgtgtcaatgtctcattttctatataaaattttggttgtttcaaaagttgtcatataaat 35098613  T
Q  101 aattgttcaaataacataact 121  Q
       | ||||||||||| ||||    
T  35098612 ggatattcaaataacacaact 35098592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 44649335 - 44649222
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| ||||||||||  | ||||| |||||||   ||||| | |||||||||||||| || | ||||||| | |||||| ||| |||||    
T  44649335 acattatgtttttactttctctcttt--tactttggtttttgtgtcaatatttaattttctttataaaattttagttgtctcaaaagttgtcatgaaaat 44649238  T
Q  101 aattgttcaaataaca 116  Q
    |  |||| ||||||||    
T  44649237 agatgtttaaataaca 44649222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 38381085 - 38380996
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttg 90  Q
    ||||||| ||||||  |||||||| || ||||||||||||||||| |||| ||  |||||||||| || |||||||||||||| ||||||    
T  38381085 acattatgtttttattttctctctctattgctttgatttttgtaccaatacctctttttctttatgaaattatggttgtcttaaaagttg 38380996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 39654903 - 39655006
Alignment:
Q  18 tctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacat 117  Q
    ||||||| || |||||||||||||||   |||| || ||||||||| ||||||||||||||||||| || ||  |||  ||||| ||||||||||||||     
T  39654903 tctctctctattgctttgatttttgtgtcaatacctcattttctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacac 39655002  T
Q  118 aact 121  Q
    ||||    
T  39655003 aact 39655006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 336816 - 336696
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||| ||||||| | |||||||| || ||||||||||||||| | |||| |   ||||||||  ||||| |||||||| | | |||||| ||||||||     
T  336816 acattgtatttttgctttctctctctattgctttgatttttgtgccaataccactttttctttgcaaattaatggttgtatcaaaagttgtcataaaaaa 336717  T
Q  101 aattgttcaaataacataact 121  Q
    | |||||||||||||| ||||    
T  336716 agttgttcaaataacacaact 336696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 18767977 - 18768037
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||||||||||||||||||||||| |||||  || | ||||||||||| ||||||||    
T  18767977 ttttctttataaatttatggttgtcttaaaagttatcacacaaataattgtttaaataaca 18768037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 27051095 - 27051016
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtc 80  Q
    ||||||| ||||||||||||||||||| || |||| |||||||   ||||||| ||||||||| |||| || ||||||||    
T  27051095 acattatctttttaccttctctctttattgttttggtttttgtgtcaatatctcattttctttgtaaaattttggttgtc 27051016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 12387674 - 12387596
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgt 79  Q
    ||||||||||||||| || |||||||| || ||||||||||||   |||| || ||||||||| ||||| |||||||||    
T  12387674 acattatatttttactttgtctctttattgttttgatttttgtgtcaatacctcattttctttgtaaatatatggttgt 12387596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 34616669 - 34616743
Alignment:
Q  47 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 121  Q
    ||||||| |||||||||||||| || ||||||||| | |||||| |||| |||||  ||||||||||||| ||||    
T  34616669 aatatctcattttctttataaaattttggttgtctcaaaagttgtcatataaatagatgttcaaataacacaact 34616743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 14603574 - 14603634
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||||||||||||||||||||| | || ||| |||  |||| |||||||||||||||    
T  14603574 ttttctttataaatttatggttgtctcaaaaattgtcatggaaatgattgttcaaataaca 14603634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 46038753 - 46038838
Alignment:
Q  29 tgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    ||||||| ||||||||  |||| || ||||||||| |||||||||| || || || |||||| ||||||  |||||||||||||||||    
T  46038753 tgctttggtttttgtaacaatacctcattttctttgtaaatttatgattatcataaaagttgtcataaa--taattgttcaaataaca 46038838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 50890082 - 50889962
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||||||||| | |||||||| || ||||||||||||||| | |||| |   ||||||||  ||||| |||||||| | | ||||||  |||||||     
T  50890082 acattatatttttgctttctctctctattgctttgatttttgtgccaataccactttttctttgcaaattaatggttgtatcaaaagttgttataaaaaa 50889983  T
Q  101 aattgttcaaataacataact 121  Q
      |||||||||||||| ||||    
T  50889982 ggttgttcaaataacacaact 50889962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 1627566 - 1627488
Alignment:
Q  2 cattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtc 80  Q
    |||||| ||||||| ||| |||| |  ||||||| ||||||| | |||| || ||||||||| ||||||||||||||||    
T  1627566 cattatgtttttactttccctctctgttgctttggtttttgtgccaatacctcattttctttgtaaatttatggttgtc 1627488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7632470 - 7632428
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  7632470 acattatatttttactttctctctctattgctttgatttttgt 7632428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16019539 - 16019581
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  16019539 acattatatttttactttctctctctattgctttgatttttgt 16019581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19232142 - 19232100
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  19232142 acattatatttttactttctctctctattgctttgatttttgt 19232100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 24990232 - 24990290
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataa 114  Q
    |||||||| ||||||||||||||||  |||||||| |||| |||| ||| |||||||||    
T  24990232 ttttctttgtaaatttatggttgtcccataagttgtcatacaaatgattattcaaataa 24990290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 37997316 - 37997394
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgt 79  Q
    ||||||| ||||||| |||||||| || |||||||||||||||   |||| || ||||||||| |||| || |||||||    
T  37997316 acattatctttttactttctctctctattgctttgatttttgtgtcaatacctcattttctttgtaaaattttggttgt 37997394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 50721753 - 50721711
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgt 43  Q
    ||||||||||||||| |||||||| |||||||||| |||||||    
T  50721753 acattatatttttactttctctctctactgctttggtttttgt 50721711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 40590707 - 40590740
Alignment:
Q  47 aatatcttattttctttataaatttatggttgtc 80  Q
    ||||||| ||||||||||||||||||||||||||    
T  40590707 aatatctaattttctttataaatttatggttgtc 40590740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 1140727 - 1140787
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||| ||||| ||||||||||  ||||||||  |  |||||||||||||||||||||    
T  1140727 ttttctttgtaaatctatggttgtcacataagttgcgaataaaataattgttcaaataaca 1140787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 11669176 - 11669223
Alignment:
Q  32 tttgatttttgtacaaatatcttattttctttataaatttatggttgtc 80  Q
    ||||||||||||| || ||||| |||||||||||||||||||| |||||    
T  11669176 tttgatttttgtataa-tatctaattttctttataaatttatgattgtc 11669223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 27371258 - 27371318
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||| ||||||||||||||||| |||||||  || | ||||  ||||||||||||||    
T  27371258 ttttctttgtaaatttatggttgtctcataagttctcaaataaattgttgttcaaataaca 27371318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36123468 - 36123420
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaat 49  Q
    ||||||||||||||| |||||||| || | ||||||||||||| |||||    
T  36123468 acattatatttttactttctctctctattactttgatttttgtgcaaat 36123420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 44977508 - 44977420
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagtt 89  Q
    ||||||| ||||||| |||||||| || ||||||| |||||||   |||| |  ||||||||| ||||||||||||||||| |||||||    
T  44977508 acattatgtttttactttctctctctattgctttggtttttgtgtcaataccccattttctttgtaaatttatggttgtctcataagtt 44977420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 36774601 - 36774680
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtc 80  Q
    ||||||||||||||| |||||||| || |||||||||||| |||| ||||  |  |||||||||||||  ||||||||||    
T  36774601 acattatatttttactttctctctctattgctttgattttagtactaatagatacttttctttataaaaatatggttgtc 36774680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 1907770 - 1907652
Alignment:
Q  3 attatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataa 102  Q
    ||||| ||||||| |||||||| || || ||||||||||||   |||  |   |||||||| |||||||||||||||| || |||||| |||  |||| |    
T  1907770 attatgtttttactttctctctctattgttttgatttttgtgtcaattccgctttttctttgtaaatttatggttgtcatacaagttgtcatctaaatga 1907671  T
Q  103 ttgttcaaataacataact 121  Q
    |||||||||||||| ||||    
T  1907670 ttgttcaaataacacaact 1907652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 43520975 - 43521037
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacata 118  Q
    |||||||| |||||| |||||||||||||| |||| |||  |||| |||||||||||||||||    
T  43520975 ttttctttgtaaattgatggttgtcttataggttgtcatgtaaatgattgttcaaataacata 43521037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 7664072 - 7663956
Alignment:
Q  4 ttatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataat 103  Q
    |||||||||||| |||||||| || ||||||| |||||||   |||| ||  |||||||| |||||||||||||||| || || ||| ||   |||| ||    
T  7664072 ttatatttttactttctctctctattgctttggtttttgtgtcaatacctctttttctttgtaaatttatggttgtcata-aaattgtcacctaaatgat 7663974  T
Q  104 tgttcaaataacataact 121  Q
    ||||||||||||| ||||    
T  7663973 tgttcaaataacacaact 7663956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 20532416 - 20532356
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||||||||||||||||| ||  |||||||  |||| ||||| ||||||||||||||    
T  20532416 ttttctttataaatttatggttatcccataagttatcatacaaatagttgttcaaataaca 20532356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 8427615 - 8427730
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    |||||||| |||||| |||||||| || |  |||| |||| ||   |||| || |||| ||||||||||||||||||||   | |||||| ||  |||||    
T  8427615 acattatacttttactttctctctctattattttggttttcgtgtcaataactaatttcctttataaatttatggttgttccaaaagttgccaccaaaat 8427714  T
Q  101 aattgttcaaataaca 116  Q
    ||||||||||||||||    
T  8427715 aattgttcaaataaca 8427730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 32477394 - 32477525
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||  |||| || |||| |||| | || || ||||||||  | |||||| || | | ||    
T  32477394 acattatctttttactttctctctatattgctttgatttttgtatgaatacctcatttcctttgtcaaattttggttgtcacaaaagttgtcacatatat 32477493  T
Q  101 aattgttcaaataacataacttttctataaat 132  Q
     | ||||||||||||| |||| || |||||||    
T  32477494 gaatgttcaaataacacaactcttttataaat 32477525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39147828 - 39147943
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||||| | || || ||||||||||||   |||| || ||||| ||| |||||||||| |||||  | |||||| ||| |||||    
T  39147828 acattatgtttttactttctctttgtattgttttgatttttgtgtcaatacctcattttttttgtaaatttatgattgtcccaaaagttgtcattaaaat 39147927  T
Q  101 aattgttcaaataaca 116  Q
      ||||||||||||||    
T  39147928 ggttgttcaaataaca 39147943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 14233720 - 14233612
Alignment:
Q  9 tttttaccttctctctttactgctttgatttttgtacaaatatctta--ttttctttataaatttatggttgtcttataagttgacataaaaataattgt 106  Q
    ||||||| || ||||| || ||||||| ||||||| ||||||| | |  |||||||| |||||| ||||||||||| ||||||| ||  |||||  ||||    
T  14233720 tttttactttatctctctattgctttggtttttgtgcaaatatttaactttttctttgtaaatt-atggttgtcttgtaagttgtcaacaaaatggttgt 14233622  T
Q  107 tcaaataaca 116  Q
    ||||||||||    
T  14233621 tcaaataaca 14233612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 5054126 - 5054061
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 121  Q
    |||| ||||||||||||||||||||| | |||||| |||| ||||| || || |||||||| ||||    
T  5054126 ttttttttataaatttatggttgtctcaaaagttgtcatataaatagttttttaaataacacaact 5054061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 18300823 - 18300892
Alignment:
Q  4 ttatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttat 73  Q
    |||||||||||  || ||||| || || |||||||||||||  |||| |||||||||||| |||||||||    
T  18300823 ttatatttttatattgtctctctattgttttgatttttgtattaataccttattttctttgtaaatttat 18300892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 3097834 - 3097750
Alignment:
Q  37 tttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 121  Q
    |||||||  ||||| || |||||||||||||| || ||||||||| | |||||| |||| ||||   ||||||||||||| ||||    
T  3097834 tttttgtgtaaataactcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 3097750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 14498960 - 14498900
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||| ||||||||||||| ||||||| |||| ||  |||| |||| |||||||||||||||    
T  14498960 ttttttttataaatttatagttgtctcataaattatcatataaatgattgttcaaataaca 14498900  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29449274 - 29449322
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaat 49  Q
    ||||||||||||||| |||||||| || | ||||||||||||| |||||    
T  29449274 acattatatttttactttctctctctattactttgatttttgtgcaaat 29449322  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 36625205 - 36625265
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||| | ||||||||||||||||||| |  ||| |||| |||||||| |||||||||||    
T  36625205 ttttctctgtaaatttatggttgtcttaaatattgtcatacaaataattattcaaataaca 36625265  T

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Target: scaffold0087 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 53324 - 53250
Alignment:
Q  47 aatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataacataact 121  Q
    ||||||| ||||||||||||||||| ||||||||| | || ||  |||| |||||| ||||||||||||| ||||    
T  53324 aatatctcattttctttataaatttttggttgtctaaaaacttatcatataaataaatgttcaaataacacaact 53250  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 213804 - 213744
Alignment:
Q  56 ttttctttataaatttatggttgtcttataagttgacataaaaataattgttcaaataaca 116  Q
    |||||||||||||||||||||||||| | || ||| |||  |||| |||||||||||||||    
T  213804 ttttctttataaatttatggttgtctcaaaaattgtcatggaaatgattgttcaaataaca 213744  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 20998145 - 20998041
Alignment:
Q  10 ttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttca 109  Q
    |||||| |||||||| || ||||||| ||||||||  |||| || ||||||||| ||||||||| ||||||  ||| ||||  || |||||  |||||||    
T  20998145 ttttactttctctctctattgctttggtttttgtatcaatacctcattttctttgtaaatttatagttgtcccatacgttgttattaaaatggttgttca 20998046  T
Q  110 aataa 114  Q
    |||||    
T  20998045 aataa 20998041  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 26595411 - 26595531
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||||||| |||||||| || ||||||| |||||||   |||| || ||||||||| |||| || ||||||| | | |||||| |||| ||||    
T  26595411 acattatgtttttactttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaattttggttgtttcaaaagttgtcatataaat 26595510  T
Q  101 aattgttcaaataacataact 121  Q
       ||||||||||||| ||||    
T  26595511 ggatgttcaaataacacaact 26595531  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 32295305 - 32295400
Alignment:
Q  20 tctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtct--tataagttgacataaaaataattgttcaaata 113  Q
    |||||||| || |||||||||||||  |||||||  |||||||| ||||||||| ||| |||  ||||||||| |||| |||| |||||| |||||    
T  32295305 tctctttattgttttgatttttgtatcaatatctacttttctttgtaaatttattgttatcttatataagttgtcatacaaatgattgtttaaata 32295400  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 30956134 - 30956249
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    |||||||  |||||| || ||||| || || |||||| || || | ||||||| ||||||||| ||||| ||||||||||  |||||||  |||| ||||    
T  30956134 acattatcattttactttatctctctattgatttgatcttcgtgccaatatctaattttctttgtaaatctatggttgtcccataagttttcatataaat 30956233  T
Q  101 aattgttcaaataaca 116  Q
      ||||||||||||||    
T  30956234 ggttgttcaaataaca 30956249  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 34084573 - 34084526
Alignment:
Q  66 aaatttatggttgtcttataagttgacataaaaataattgttcaaata 113  Q
    |||||||||||||||| |||||||| |||| ||||| |||||||||||    
T  34084573 aaatttatggttgtctcataagttgtcatacaaatagttgttcaaata 34084526  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 5028267 - 5028159
Alignment:
Q  9 tttttaccttctctctttactgctttgatttttgtacaaatatcttatttt-ctttataaatttatggttgtcttataagttgacataaaaataattgtt 107  Q
    ||||||| || |||||||| ||||||| |||| ||  ||||||||  |||| ||||||||||| |||||||||| |||||||  ||   |||| ||||||    
T  5028267 tttttactttatctctttattgctttggttttcgtgtaaatatctactttttctttataaatt-atggttgtctcataagttatcaaccaaatgattgtt 5028169  T
Q  108 caaataacat 117  Q
    ||||||||||    
T  5028168 caaataacat 5028159  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5522646 - 5522533
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    |||||||| |||||| |||||||| |  ||||||| ||||||| | |||| ||  ||| ||||||||||||||||||||   | |||||| ||  |||||    
T  5522646 acattatacttttactttctctctat--tgctttggtttttgtgctaatacctactttcctttataaatttatggttgttccaaaagttgtcaccaaaat 5522549  T
Q  101 aattgttcaaataaca 116  Q
      ||||||||||||||    
T  5522548 tgttgttcaaataaca 5522533  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 14818002 - 14818114
Alignment:
Q  9 tttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaataattgttc 108  Q
    ||||||| ||||||||||| || |||| ||||||| | | || || |||| |||| |||| || ||||||||  | |||||| |||| | |||| |||||    
T  14818002 tttttactttctctctttattgttttggtttttgtgccactacctcatttcctttctaaaattttggttgtcacaaaagttgtcatatatataaatgttc 14818101  T
Q  109 aaataacataact 121  Q
    |||||||| ||||    
T  14818102 aaataacacaact 14818114  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 16796 - 16678
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||| ||| ||||||||| | ||||||  ||||||||| |||| || ||||||||| ||||| | || |||||||| |||||| |||| ||||    
T  16796 acattatctttatactttctctctt-attgctttagtttttgtaccaatacctcattttctttgtaaatgt-tgattgtcttaaaagttgtcatataaat 16699  T
Q  101 aattgttcaaataacataact 121  Q
       ||||||||||||| ||||    
T  16698 ggatgttcaaataacagaact 16678  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 56048 - 56166
Alignment:
Q  1 acattatatttttaccttctctctttactgctttgatttttgtacaaatatcttattttctttataaatttatggttgtcttataagttgacataaaaat 100  Q
    ||||||| ||| ||| ||||||||| | ||||||  ||||||||| |||| || ||||||||| ||||| | || |||||||| |||||| |||| ||||    
T  56048 acattatctttatactttctctctt-attgctttagtttttgtaccaatacctcattttctttgtaaatgt-tgattgtcttaaaagttgtcatataaat 56145  T
Q  101 aattgttcaaataacataact 121  Q
       ||||||||||||| ||||    
T  56146 ggatgttcaaataacagaact 56166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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