View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_low_3 (Length: 581)

Name: NF12740_low_3
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_low_3
NF12740_low_3
[»] chr7 (3 HSPs)
chr7 (68-473)||(39741956-39742364)
chr7 (358-473)||(48850726-48850840)
chr7 (403-473)||(20077342-20077412)
[»] chr4 (7 HSPs)
chr4 (68-474)||(6898414-6898823)
chr4 (404-473)||(12094856-12094925)
chr4 (403-470)||(9451245-9451312)
chr4 (403-473)||(24257703-24257773)
chr4 (358-456)||(7810064-7810162)
chr4 (408-474)||(4883589-4883655)
chr4 (407-473)||(27067874-27067940)
[»] chr3 (12 HSPs)
chr3 (358-474)||(15291460-15291575)
chr3 (403-473)||(1529165-1529236)
chr3 (491-562)||(11994640-11994711)
chr3 (403-474)||(52041384-52041455)
chr3 (403-475)||(1141742-1141814)
chr3 (403-474)||(39484808-39484880)
chr3 (403-473)||(22424370-22424440)
chr3 (404-450)||(37605421-37605468)
chr3 (407-474)||(42655772-42655839)
chr3 (358-434)||(48909790-48909865)
chr3 (402-474)||(15996379-15996450)
chr3 (358-473)||(49235433-49235547)
[»] chr5 (6 HSPs)
chr5 (52-255)||(33619422-33619630)
chr5 (358-472)||(22780015-22780128)
chr5 (404-473)||(37337323-37337393)
chr5 (404-474)||(26110687-26110758)
chr5 (404-474)||(11300764-11300835)
chr5 (407-473)||(31981793-31981859)
[»] chr8 (6 HSPs)
chr8 (404-474)||(42315341-42315412)
chr8 (404-474)||(45244285-45244356)
chr8 (404-473)||(23828343-23828413)
chr8 (402-473)||(3193173-3193244)
chr8 (403-476)||(26981032-26981105)
chr8 (440-474)||(7496757-7496791)
[»] chr6 (10 HSPs)
chr6 (404-474)||(31665629-31665700)
chr6 (404-471)||(15296147-15296215)
chr6 (358-473)||(26840415-26840529)
chr6 (403-474)||(31442516-31442587)
chr6 (403-473)||(826732-826802)
chr6 (358-475)||(26839987-26840103)
chr6 (403-473)||(21762022-21762092)
chr6 (403-470)||(30836481-30836548)
chr6 (399-473)||(7867944-7868018)
chr6 (403-473)||(20915997-20916067)
[»] scaffold0019 (1 HSPs)
scaffold0019 (472-562)||(108515-108605)
[»] chr2 (11 HSPs)
chr2 (358-474)||(6667462-6667577)
chr2 (403-474)||(32281485-32281556)
chr2 (404-474)||(28926074-28926144)
chr2 (358-474)||(28922372-28922486)
chr2 (403-473)||(38996520-38996590)
chr2 (387-470)||(21922337-21922420)
chr2 (403-474)||(22625387-22625458)
chr2 (399-473)||(28125536-28125610)
chr2 (406-474)||(29280084-29280152)
chr2 (403-473)||(38955840-38955910)
chr2 (358-457)||(14456264-14456362)
[»] chr1 (6 HSPs)
chr1 (403-473)||(15700721-15700791)
chr1 (404-477)||(46555498-46555572)
chr1 (403-473)||(22964007-22964077)
chr1 (407-462)||(3908833-3908888)
chr1 (427-473)||(24819183-24819229)
chr1 (427-474)||(44508600-44508647)
[»] scaffold0014 (1 HSPs)
scaffold0014 (477-536)||(141699-141758)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 68 - 473
Target Start/End: Original strand, 39741956 - 39742364
Alignment:
Q  68 cggtgttcttcaaatgatgatgccggaagaggagccgatgacggttttaacaacttgggtgaatgaaattgatgtgcaaaagagattaggtttccaatga 167  Q
    ||||| |||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  39741956 cggtggtcttcagatgatgatgccggaaggggaggcgatgagggttttaacaacttgggtgaatgaaattgttgtgcaaaggagattaggtttccaatga 39742055  T
Q  168 gatatgatattgaaaggaggtgatgggaggggaaatgagagaaagagaaagcttaatcttaactctgaagaaacttgaggcgtcggta------------ 255  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||| || ||||||||||||||||||| || |||||                
T  39742056 gatatgatattgaaatgaggtgatggaaggggaaatgagagaaagaggaagtttaagctgaactctgaagaaacttgagccggcggtacaaccatcaagg 39742155  T
Q  256 ggaacattgaaaattggtaaaattaagctggcagacaaaagtcataaataacattggtatctagcaatttttgttctcctatgtatatacatttttgttt 355  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||||||    
T  39742156 ggaacattgaaaattggtaaaattaagttggcagacaaaagtcataaataacgttggtatccagcaatttttgttctcctatg--tatacatttttgttt 39742253  T
Q  356 ccaatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaaca 455  Q
    |||||| | |||       ||  ||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  39742254 ccaatgcttatt-------acgattagaaggagttaatgctaacataatcgagggaaaatattaggttaagattagggttatcaatagcttgatcaaaca 39742346  T
Q  456 agctttagtaagaaagat 473  Q
    ||||||||||||||||||    
T  39742347 agctttagtaagaaagat 39742364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 358 - 473
Target Start/End: Complemental strand, 48850840 - 48850726
Alignment:
Q  358 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaag 457  Q
    |||| ||||||| |||| |||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||||| |  |||||||||| || |||||    
T  48850840 aatgctgattaggattagcacttagaaggagttaatgctaacataatggagggaaaa-attaggttaagattagggtaaacaatagcttgatcagacaag 48850742  T
Q  458 ctttagtaagaaagat 473  Q
    |||||| |||||||||    
T  48850741 ctttagaaagaaagat 48850726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 473
Target Start/End: Original strand, 20077342 - 20077412
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||||||||||||||||||| ||||||||     || |||||||||||||||||||||||||||||||    
T  20077342 atggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 68 - 474
Target Start/End: Original strand, 6898414 - 6898823
Alignment:
Q  68 cggtgttcttcaaatgatgatgccggaagaggagccgatgacggttttaacaacttgggtgaatgaaattgatgtgcaaaagagattaggtttccaatga 167  Q
    ||||| |||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  6898414 cggtggtcttcagatgatgatgccggaaggggaggcgatgagggttttaacaacttgggtgaatgaaattgttgtgcaaaagagattaggttttcaatga 6898513  T
Q  168 gatatgatattgaaaggaggtgatgggaggggaaatgagagaaagagaaagcttaatcttaactctgaagaaacttgaggcgtcggta------------ 255  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||| || ||||||||||||||||||| || |||||                
T  6898514 gatatgatattgaaatgaggtgatggaaggggaaatgagagaaagaggaagtttaagctgaactctgaagaaacttgagccggcggtacaaccatcaagg 6898613  T
Q  256 ggaacattgaaaattggtaaaattaagctggcagacaaaagtcataaataacattggtatctagcaatttttgttctcctatgtatatacatttttgttt 355  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||  |||||||||||||||    
T  6898614 ggaacattgaaaattggtaaaattaggttggcagacaaaagtcataaataacgttggtatccagcaatttttgttctcccatg--tatacatttttgttt 6898711  T
Q  356 ccaatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaaca 455  Q
    |||||| | ||||  ||   |||    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  6898712 ccaatgcttattacgat---cac----aaggagttaatgctaacacaatggacggaaaatattaggttaagattagggttaccaatagcttgatcaaaca 6898804  T
Q  456 agctttagtaagaaagata 474  Q
    |||||||||||||||||||    
T  6898805 agctttagtaagaaagata 6898823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 404 - 473
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  404 tggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  12094856 tggagggaaaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 403 - 470
Target Start/End: Complemental strand, 9451312 - 9451245
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaa 470  Q
    ||||||||||||||||||||||| |||||||| |  ||||||||||||| ||||||||||||||||||    
T  9451312 atggagggaaaatattaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaa 9451245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 24257773 - 24257703
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||| ||||||||||||||| |||||||| |  ||| |||||||||||||||||||||||||||||||    
T  24257773 atggaggaaaaatattaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 456
Target Start/End: Complemental strand, 7810162 - 7810064
Alignment:
Q  358 aatgttgattagaattaacacttaaa--aggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaaca 455  Q
    |||||||||||| |||| |||||| |  |||||||||| | || ||||||||||||||| ||||||||||||||||||| |  |||||||||||||||||    
T  7810162 aatgttgattaggattagcacttatagaaggagttaatccgaa-acaatggagggaaaa-attaggttaagattagggtaaacaatagcttgaccaaaca 7810065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 474
Target Start/End: Original strand, 4883589 - 4883655
Alignment:
Q  408 gggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    |||||||| ||||||||   |||||||||  |||||||||||| |||||||||||||||| ||||||    
T  4883589 gggaaaatgttaggttagttttagggttaggaatagcttgacctaacaagctttagtaagtaagata 4883655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 27067940 - 27067874
Alignment:
Q  407 agggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    |||||||||||||| |||| ||||||||     |||| |||||||||||||||||||||||||||||    
T  27067940 agggaaaatattagattaaaattagggtataggatagtttgaccaaacaagctttagtaagaaagat 27067874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 358 - 474
Target Start/End: Complemental strand, 15291575 - 15291460
Alignment:
Q  358 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaag 457  Q
    |||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |  |||||||||||||||||||    
T  15291575 aatgttgattaggattagcacttagaaggagttaatgctaatacaatggagggaaaa-attaggttaagattagggtaaacaatagcttgaccaaacaag 15291477  T
Q  458 ctttagtaagaaagata 474  Q
    |||||||||||||||||    
T  15291476 ctttagtaagaaagata 15291460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 1529236 - 1529165
Alignment:
Q  403 atggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1529236 atggagggaaaaaattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 491 - 562
Target Start/End: Complemental strand, 11994711 - 11994640
Alignment:
Q  491 agtagcactggagaatagaaaacaacatccttccatcaaaccaatagcagtaacacggctcgtaaaaaacaa 562  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| | ||||||||    
T  11994711 agtagcactggagaatagcaaacaacatccttccatcaaaccaatagcagcaacacgcctcatcaaaaacaa 11994640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 403 - 474
Target Start/End: Original strand, 52041384 - 52041455
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    ||||| ||||||||||||||||| |||||||| |  ||||||||||||| ||||||||||||||||||||||    
T  52041384 atggaaggaaaatattaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaagata 52041455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 1141814 - 1141742
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagatac 475  Q
    |||||||||||||||||| |||| ||||| || |  ||| |||||||||||||||||||||||||||||||||    
T  1141814 atggagggaaaatattagattaaaattagagtgaacaattgcttgaccaaacaagctttagtaagaaagatac 1141742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 474
Target Start/End: Original strand, 39484808 - 39484880
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttacta-atagcttgaccaaacaagctttagtaagaaagata 474  Q
    ||||||||||||||||||||||| | |||||| |  | |||||||||||||||||||||||||||||||||||    
T  39484808 atggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagata 39484880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 473
Target Start/End: Original strand, 22424370 - 22424440
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||||||||||||||||||| |||||||| |  ||||||||||||| | || ||||||||||||||||    
T  22424370 atggagggaaaatattaggttaaaattagggtgaacaatagcttgaccagataaactttagtaagaaagat 22424440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 450
Target Start/End: Original strand, 37605421 - 37605468
Alignment:
Q  404 tggagggaaaatattaggttaag-attagggttactaatagcttgacc 450  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37605421 tggagggaaaatattaggttaagaattagggttactaatagcttgacc 37605468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 474
Target Start/End: Complemental strand, 42655839 - 42655772
Alignment:
Q  407 agggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    ||||||||||||| ||||| |||||||| |  ||||||||||||| ||||||||| ||||||||||||    
T  42655839 agggaaaatattatgttaaaattagggtgaacaatagcttgaccagacaagctttggtaagaaagata 42655772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 434
Target Start/End: Original strand, 48909790 - 48909865
Alignment:
Q  358 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggt 434  Q
    |||| ||||||| |||| || ||| ||||||||||  ||||||||||| |||||||| |||||||||||||||||||    
T  48909790 aatgctgattaggattagcatttagaaggagttaacactaatacaatgaagggaaaa-attaggttaagattagggt 48909865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 474
Target Start/End: Original strand, 15996379 - 15996450
Alignment:
Q  402 aatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    |||| |||||||| |||||||||  |||||||| |  |||||||||| || ||||||||||||||||||||||    
T  15996379 aatgcagggaaaa-attaggttagaattagggtaaacaatagcttgatcagacaagctttagtaagaaagata 15996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 473
Target Start/End: Original strand, 49235433 - 49235547
Alignment:
Q  358 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaag 457  Q
    |||| ||||||| | || ||||||||| || |||||| ||  |||||||||| ||||  | | ||| | |||||||| | | |||||||||||||||||     
T  49235433 aatgctgattaggaataccacttaaaaagatttaatgttatcacaatggaggaaaaaattaatgttga-attagggtaaatgatagcttgaccaaacaaa 49235531  T
Q  458 ctttagtaagaaagat 473  Q
    ||||||||||||||||    
T  49235532 ctttagtaagaaagat 49235547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 52 - 255
Target Start/End: Original strand, 33619422 - 33619630
Alignment:
Q  52 tgcatacctccttcgacggtgttcttcaaatgatgatgccggaagaggagccgatgacggttttaacaacttgggtgaatgaaattgatgtgc------- 144  Q
    ||||||||||| |||| |||| |||| | |||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||| |||||           
T  33619422 tgcatacctccatcgaaggtggtctttagatgatgatgccggagggggaggcgatgagggttttaacaacttgggtgaatgaaattgttgtgcttactcg 33619521  T
Q  145 -aaaagagattaggtttccaatgagatatgatattgaaaggaggtgatgggaggggaaatgagagaaagagaaagcttaatcttaactctgaagaaactt 243  Q
      | |||||||||||||| | ||||| |||||||||||||||||||||  ||||||||||||||||| |||||||   || ||||| ||||||||||| |    
T  33619522 ttatagagattaggtttctattgagaaatgatattgaaaggaggtgat--gaggggaaatgagagaaggagaaagagaaagcttaa-tctgaagaaacat 33619618  T
Q  244 gaggcgtcggta 255  Q
    ||| | ||||||    
T  33619619 gagccatcggta 33619630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 358 - 472
Target Start/End: Original strand, 22780015 - 22780128
Alignment:
Q  358 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaag 457  Q
    |||| ||||||  |||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |  |||||||||| || |||||    
T  22780015 aatgctgattatgattagcacttagaaggagttaatgctaacacaatggagggaaaa-attaggttaagattagggtaaacaatagcttgatcagacaag 22780113  T
Q  458 ctttagtaagaaaga 472  Q
    |||||| ||||||||    
T  22780114 ctttagaaagaaaga 22780128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 37337393 - 37337323
Alignment:
Q  404 tggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  37337393 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagctttagtaagaaagat 37337323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 26110758 - 26110687
Alignment:
Q  404 tggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    |||||||||||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||||||||    
T  26110758 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagata 26110687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 11300764 - 11300835
Alignment:
Q  404 tggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    |||||||||||||||||||||| | ||||||||||| ||||||| |||| ||||| ||||||||||||||||    
T  11300764 tggagggaaaatattaggttaaaaattagggttacttatagcttcaccagacaagttttagtaagaaagata 11300835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 31981859 - 31981793
Alignment:
Q  407 agggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||||||||||||||| |||||| | |  ||| |||||| ||||||||||||||||| ||||||    
T  31981859 agggaaaatattaggttaaaattaggttgaacaattgcttgatcaaacaagctttagtaaaaaagat 31981793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 42315412 - 42315341
Alignment:
Q  404 tggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42315412 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 42315341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 45244285 - 45244356
Alignment:
Q  404 tggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||    
T  45244285 tggagggaaaatattaggttaagaattagggttactaatagcttgaccagacaaactttagtaagaaagata 45244356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 23828413 - 23828343
Alignment:
Q  404 tggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||    
T  23828413 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaacaagctctagtaagaaagat 23828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 473
Target Start/End: Original strand, 3193173 - 3193244
Alignment:
Q  402 aatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    |||||||||||||||||||||||| |||| | | | ||||  |||||||| |||||||||||||||||||||    
T  3193173 aatggagggaaaatattaggttaaaattaagatgaataattacttgaccagacaagctttagtaagaaagat 3193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 476
Target Start/End: Complemental strand, 26981105 - 26981032
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagatact 476  Q
    ||||||| ||||||||||||||| ||||||||     || |||||| |||||||||||||||||||||||||||    
T  26981105 atggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagctttagtaagaaagatact 26981032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 474
Target Start/End: Complemental strand, 7496791 - 7496757
Alignment:
Q  440 atagcttgaccaaacaagctttagtaagaaagata 474  Q
    ||||||||| |||||||||||||||||||||||||    
T  7496791 atagcttgatcaaacaagctttagtaagaaagata 7496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 31665629 - 31665700
Alignment:
Q  404 tggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31665629 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 31665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 404 - 471
Target Start/End: Complemental strand, 15296215 - 15296147
Alignment:
Q  404 tggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaag 471  Q
    |||||||||||||||||||||| | ||||||||||| |||||||||| |||||||||||||||||||||    
T  15296215 tggagggaaaatattaggttaaaaattagggttacttatagcttgacaaaacaagctttagtaagaaag 15296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 358 - 473
Target Start/End: Complemental strand, 26840529 - 26840415
Alignment:
Q  358 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaag 457  Q
    |||||||||||| | | ||||||| |||||||||||| ||| |    |||||||||| | ||||||||||||||||||| | || |||||||||||||||    
T  26840529 aatgttgattaggaattacacttagaaggagttaatgttaagatttgggagggaaaa-agtaggttaagattagggttaatgatggcttgaccaaacaag 26840431  T
Q  458 ctttagtaagaaagat 473  Q
    |||||| |||||||||    
T  26840430 ctttagaaagaaagat 26840415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 403 - 474
Target Start/End: Complemental strand, 31442587 - 31442516
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    ||||||||||||||||||||||| ||||||||   | || ||||||||||||||||||||||||||||||||    
T  31442587 atggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 403 - 473
Target Start/End: Original strand, 826732 - 826802
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||||||||||||||||||| |||| ||| |  ||||||||||||| ||||| |||||||||||||||    
T  826732 atggagggaaaatattaggttaaaattaaggtgaacaatagcttgaccagacaagttttagtaagaaagat 826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 26840103 - 26839987
Alignment:
Q  358 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaag 457  Q
    |||||||||||| | | ||||||| |||||||||||| ||| |    |||||||||| | ||||||||||||||||||| | || |||||| |||||||     
T  26840103 aatgttgattaggaattacacttagaaggagttaatgttaagatttgggagggaaaa-agtaggttaagattagggttaatgatggcttgatcaaacaaa 26840005  T
Q  458 ctttagtaagaaagatac 475  Q
    |||||| |||||||||||    
T  26840004 ctttagaaagaaagatac 26839987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 21762092 - 21762022
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    |||||||||||||| |||||||| |||||||| |  |||||||||| || ||||| |||||||||||||||    
T  21762092 atggagggaaaatagtaggttaaaattagggtgagcaatagcttgatcagacaagttttagtaagaaagat 21762022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 470
Target Start/End: Original strand, 30836481 - 30836548
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaa 470  Q
    |||||||||||||||||| |||| |||||||| |  ||| |||||| || ||||||||||||||||||    
T  30836481 atggagggaaaatattagattaaaattagggtgaacaattgcttgatcagacaagctttagtaagaaa 30836548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 7867944 - 7868018
Alignment:
Q  399 tacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||||||||||||||||||| | | ||||||||     |||||||||||| | |||||||||||||||||||    
T  7867944 tacaatggagggaaaatattagggttaaattagggtatgagatagcttgaccagataagctttagtaagaaagat 7868018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 473
Target Start/End: Original strand, 20915997 - 20916067
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||||||||||||||||||| |||| |||  |  || |||||| || |||||||||||||||||||||    
T  20915997 atggagggaaaatattaggttaaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 472 - 562
Target Start/End: Original strand, 108515 - 108605
Alignment:
Q  472 atactctatcaacaccgagagtagcactggagaatagaaaacaacatccttccatcaaaccaatagcagtaacacggctcgtaaaaaacaa 562  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||    
T  108515 atacactatcaacaccaagagtagcaccggagaatagaaaacaacatccttccatcaaaccaatagcagcaacacgcctcatcaaaaacaa 108605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 358 - 474
Target Start/End: Complemental strand, 6667577 - 6667462
Alignment:
Q  358 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaag 457  Q
    |||| ||||||| |||| || ||| || |||||||||||||| |||||||||||||| ||||||||| ||||||||| |  |||||||||||||||||||    
T  6667577 aatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaa-attaggttaggattagggtaaacaatagcttgaccaaacaag 6667479  T
Q  458 ctttagtaagaaagata 474  Q
    |||||| ||||||||||    
T  6667478 ctttagaaagaaagata 6667462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 403 - 474
Target Start/End: Complemental strand, 32281556 - 32281485
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  32281556 atggagggaaaatactaggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagata 32281485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 28926144 - 28926074
Alignment:
Q  404 tggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  28926144 tggagggaaaa-attaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagata 28926074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 358 - 474
Target Start/End: Original strand, 28922372 - 28922486
Alignment:
Q  358 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaag 457  Q
    |||| ||||||| |||| |||||| || || |||||||||| |||||||| |||||| ||||||||||||||||||| |  ||||||||||||| ||| |    
T  28922372 aatgctgattaggattaccacttagaatga-ttaatgctaacacaatggatggaaaa-attaggttaagattagggtaaacaatagcttgaccagacatg 28922469  T
Q  458 ctttagtaagaaagata 474  Q
    |||||||||| ||||||    
T  28922470 ctttagtaagtaagata 28922486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 403 - 473
Target Start/End: Original strand, 38996520 - 38996590
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||||||||||||||||||| |||||||| ||  ||||||||| || |||||||||||||||||||||    
T  38996520 atggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 387 - 470
Target Start/End: Complemental strand, 21922420 - 21922337
Alignment:
Q  387 agttaatgctaatacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaa 470  Q
    |||||||||||| |  | |||||||||||||||||||||||||||||| | | ||||||||| || ||||||||||| ||||||    
T  21922420 agttaatgctaagattaaggagggaaaatattaggttaagattagggtaagttatagcttgatcagacaagctttagaaagaaa 21922337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 403 - 474
Target Start/End: Original strand, 22625387 - 22625458
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    ||||||||||||||||||||||| ||||||||  | ||| ||||||||| ||||| ||||||||||||||||    
T  22625387 atggagggaaaatattaggttaaaattagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 28125610 - 28125536
Alignment:
Q  399 tacaatggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||||||||||||||||||| | | ||||||||     |||||||||||| |||||||||||||||||||||    
T  28125610 tacaatggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 29280152 - 29280084
Alignment:
Q  406 gagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    |||||||||||||||||||| |||||||| |  |||||||| | || ||||| ||||||||||||||||    
T  29280152 gagggaaaatattaggttaaaattagggtgaacaatagcttcatcagacaagttttagtaagaaagata 29280084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 473
Target Start/End: Original strand, 38955840 - 38955910
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||||||||||||||||||  ||||||||||  ||||| |||| || | ||||||||||||| |||||    
T  38955840 atggagggaaaatattaggttagaattagggttatcaatagtttgatcagataagctttagtaagtaagat 38955910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 457
Target Start/End: Original strand, 14456264 - 14456362
Alignment:
Q  358 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattag-gttaagattagggttactaatagcttgaccaaacaa 456  Q
    |||||||||||| | || |||||| ||||| |||||||||  ||||||||||||||| ||||| ||| | |||||||| | | |||||||||||||||||    
T  14456264 aatgttgattaggaataccacttagaaggatttaatgctatcacaatggagggaaaa-attagagttga-attagggtaaatgatagcttgaccaaacaa 14456361  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 15700791 - 15700721
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  15700791 atggagggaaaatactaggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 404 - 477
Target Start/End: Complemental strand, 46555572 - 46555498
Alignment:
Q  404 tggagggaaaatattaggttaaga-ttagggttactaatagcttgaccaaacaagctttagtaagaaagatactc 477  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||| ||||||||||    
T  46555572 tggagggaaaatattaggttaagaattagggttactaatagcttgaccggacaagctttagtaataaagatactc 46555498  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 22964077 - 22964007
Alignment:
Q  403 atggagggaaaatattaggttaagattagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  22964077 atggagggaaaatattaggttagaattagggttaccaatagcttgaccagacaagctttagtaagtaagat 22964007  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 407 - 462
Target Start/End: Original strand, 3908833 - 3908888
Alignment:
Q  407 agggaaaatattaggttaagattagggttactaatagcttgaccaaacaagcttta 462  Q
    |||||||||| |||||||| ||||||||||| |||||||||| || ||||||||||    
T  3908833 agggaaaatagtaggttaaaattagggttaccaatagcttgatcagacaagcttta 3908888  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 473
Target Start/End: Complemental strand, 24819229 - 24819183
Alignment:
Q  427 attagggttactaatagcttgaccaaacaagctttagtaagaaagat 473  Q
    |||||||||| |||||||||||||||||||||||| ||||| |||||    
T  24819229 attagggttagtaatagcttgaccaaacaagctttggtaagtaagat 24819183  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 474
Target Start/End: Complemental strand, 44508647 - 44508600
Alignment:
Q  427 attagggttactaatagcttgaccaaacaagctttagtaagaaagata 474  Q
    |||||||||| ||||||||||| || ||||||||||| ||||||||||    
T  44508647 attagggttagtaatagcttgatcagacaagctttagaaagaaagata 44508600  T

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Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 536
Target Start/End: Complemental strand, 141758 - 141699
Alignment:
Q  477 ctatcaacaccgagagtagcactggagaatagaaaacaacatccttccatcaaaccaata 536  Q
    ||||||||||| |||||||||||||||||| | ||||||||| ||||||| |||||||||    
T  141758 ctatcaacaccaagagtagcactggagaatggcaaacaacattcttccataaaaccaata 141699  T

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