View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_low_32 (Length: 296)

Name: NF12740_low_32
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_low_32
NF12740_low_32
[»] chr8 (3 HSPs)
chr8 (3-94)||(43169423-43169514)
chr8 (145-213)||(27811830-27811899)
chr8 (108-156)||(27811673-27811721)
[»] scaffold0329 (3 HSPs)
scaffold0329 (145-229)||(18616-18701)
scaffold0329 (106-158)||(18720-18772)
scaffold0329 (97-156)||(18810-18869)
[»] chr6 (7 HSPs)
chr6 (145-229)||(19839823-19839908)
chr6 (145-213)||(30822557-30822626)
chr6 (108-156)||(12592771-12592819)
chr6 (107-158)||(12592860-12592911)
chr6 (105-155)||(6672589-6672639)
chr6 (100-156)||(6672501-6672556)
chr6 (108-156)||(30813134-30813182)
[»] chr1 (1 HSPs)
chr1 (98-160)||(3399937-3399999)


Alignment Details
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 43169514 - 43169423
Alignment:
Q  3 agagaatcgaagaaccattgcagtcagttcacctattttcattacatttcatttggtcatttgtattcactatttatgtcatgaatggttac 94  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| ||| |||| |||||  |||||||| ||||||||||||||||||||||    
T  43169514 agagaaacgaagaaccattgcagtcagttcacctatcttcattagattccattcggtcacctgtattcaatatttatgtcatgaatggttac 43169423  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 27811830 - 27811899
Alignment:
Q  145 aattgagatttttataaaaatcgatgacagac-ctacacagttgcacaaagaagcacataagcaagagtc 213  Q
    ||||||||||||||||||||| ||||||||   ||||||||||||||||| |||||||||||||| ||||    
T  27811830 aattgagatttttataaaaattgatgacaggtactacacagttgcacaaacaagcacataagcaacagtc 27811899  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 27811673 - 27811721
Alignment:
Q  108 atgttgctctgctatagcagctagtaacattaacataaattgagatttt 156  Q
    |||||||||||||| | ||||||| |||||||||| ||||||| |||||    
T  27811673 atgttgctctgctacatcagctagcaacattaacagaaattgaaatttt 27811721  T

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Target: scaffold0329 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 18701 - 18616
Alignment:
Q  145 aattgagatttttataaaaatcgatgacagacct-acacagttgcacaaagaagcacataagcaagagtccacactaacaggacaa 229  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||||| ||||||| ||||||||||||| ||| |||||||||||    
T  18701 aattgagatttttataaaaattgatgacagagcttacacagttgcacatagaagcatataagcaagagtcaacattaacaggacaa 18616  T

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Target: scaffold0329; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 18772 - 18720
Alignment:
Q  106 taatgttgctctgctatagcagctagtaacattaacataaattgagattttta 158  Q
    |||||||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  18772 taatgttgctctgctatagcagctagcaacattaacagaaactgagattttta 18720  T

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Target: scaffold0329; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 18869 - 18810
Alignment:
Q  97 tgcaaaaattaatgttgctctgctatagcagctagtaacattaacataaattgagatttt 156  Q
    |||||||  |||||||||||||||| || |||||| |||| |||||||||||||||||||    
T  18869 tgcaaaagctaatgttgctctgctacaggagctagcaacaataacataaattgagatttt 18810  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 19839908 - 19839823
Alignment:
Q  145 aattgagatttttataaaaatcgatgacagacct-acacagttgcacaaagaagcacataagcaagagtccacactaacaggacaa 229  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||||  ||| |||||||||||    
T  19839908 aattgagatttttataaaaattgatgacagaccttacatagttgcacaaagaagcatataagcaagagtaaacattaacaggacaa 19839823  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 30822557 - 30822626
Alignment:
Q  145 aattgagatttttataaaaatcgatgacagac-ctacacagttgcacaaagaagcacataagcaagagtc 213  Q
    ||||||||||||||||||||| |||||||| | ||||||| ||||||| | |||||||||||||| ||||    
T  30822557 aattgagatttttataaaaattgatgacaggcactacacaattgcacagacaagcacataagcaacagtc 30822626  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 12592771 - 12592819
Alignment:
Q  108 atgttgctctgctatagcagctagtaacattaacataaattgagatttt 156  Q
    |||||||||||||| | ||||||| |||||||||| |||||||||||||    
T  12592771 atgttgctctgctacatcagctagcaacattaacagaaattgagatttt 12592819  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 12592860 - 12592911
Alignment:
Q  107 aatgttgctctgctatagcagctagtaacattaacataaattgagattttta 158  Q
    ||||||||||||||| ||||||||| |||| ||||  |||||||||||||||    
T  12592860 aatgttgctctgctacagcagctagcaacagtaacgaaaattgagattttta 12592911  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 6672639 - 6672589
Alignment:
Q  105 ttaatgttgctctgctatagcagctagtaacattaacataaattgagattt 155  Q
    ||||||||||||||||| ||||| ||| |||||||||| ||||| ||||||    
T  6672639 ttaatgttgctctgctacagcagatagcaacattaacaaaaattaagattt 6672589  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 6672556 - 6672501
Alignment:
Q  100 aaaaattaatgttgctctgctatagcagctagtaacattaacataaattgagatttt 156  Q
    |||| ||||||||||||||| ||| ||||||||||||  |||| |||||||||||||    
T  6672556 aaaagttaatgttgctctgc-ataacagctagtaacaagaacagaaattgagatttt 6672501  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 30813134 - 30813182
Alignment:
Q  108 atgttgctctgctatagcagctagtaacattaacataaattgagatttt 156  Q
    |||||||||||||| | ||||||| |||||||||| ||||||| |||||    
T  30813134 atgttgctctgctacatcagctagcaacattaacagaaattgaaatttt 30813182  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 3399937 - 3399999
Alignment:
Q  98 gcaaaaattaatgttgctctgctatagcagctagtaacattaacataaattgagatttttata 160  Q
    |||||| ||||||| ||||||||| | ||||||| ||| |||| | |||||||||||||||||    
T  3399937 gcaaaagttaatgtcgctctgctacaacagctagcaacgttaaaaaaaattgagatttttata 3399999  T

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