View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_35 (Length: 286)
Name: NF12740_low_35
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 31362934 - 31362672
Alignment:
| Q |
1 |
acatccactcaatgtttcttcctgtcactcattctcatttggttcatatctcaaacatcttttggagctaatactattcaccccgacgaaagtatgattc |
100 |
Q |
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| T |
31362934 |
acatccactcaatgtttcttcctttcactcattctcatttggttgatatctcaaacatcttttggagctaatactattcaccccgacgaaagtatgattc |
31362835 |
T |
|
| Q |
101 |
ttattattgctatactaccaaacaataaagaaaattctttcatctttcttttcaagttattttcatctaaggattcatgt--tagttcaaatatcatgta |
198 |
Q |
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||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31362834 |
ttatttctgctatactaccaaccaatatagaaatttctttcatct-----------ttattttcatctaaggattcatgttatagttcaaatatcatgta |
31362746 |
T |
|
| Q |
199 |
ttattttttgctcatgtagaaattctgtatatatatttaatgacatgtgtgtgtagtttagaaatcttttcagt |
272 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||| |
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| T |
31362745 |
ttattttttgctcatgtagaaattctgtatctatatttgatgacatgtgtgtgtagtttagaagttttttcagt |
31362672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 31295368 - 31295166
Alignment:
| Q |
3 |
atccactcaatgtttcttcctgtcactcattctcatttggttcatatctcaaacatcttttggagctaatactattcaccccgacgaaagtatgattctt |
102 |
Q |
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||||||||||| ||||||||| ||| ||||||||||||||| |||||||| |||| |||||||||||| |||||||||||| || ||||||||||| || |
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| T |
31295368 |
atccactcaatttttcttcctttcattcattctcatttggtccatatctctaacagcttttggagctactactattcaccctgatgaaagtatgatattt |
31295269 |
T |
|
| Q |
103 |
attattgctata-ctaccaaacaataaagaaaattctt-----tcatctttcttttcaagttattttcatctaaggattcatgttagttcaaatatcatg |
196 |
Q |
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||| | ||| || ||||| |||||| ||| ||||| | |||||||||||| |||| |||||||||||||||||||||||| ||||||||||| |
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| T |
31295268 |
atttccaccatagctcccaaataataaataaagttcttttatctgatctttcttttctagtt-ttttcatctaaggattcatgttagctcaaatatcata |
31295170 |
T |
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| Q |
197 |
tatt |
200 |
Q |
| |
|
|||| |
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| T |
31295169 |
tatt |
31295166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 31310610 - 31310429
Alignment:
| Q |
15 |
tttcttcctgtcactcattctcatttggttcatatctcaaacatcttttggagctaatactattcaccccgacgaaagtatgattcttattattgctata |
114 |
Q |
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|||||| || || |||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||| |||| ||||||| |
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| T |
31310610 |
tttctttctttctctcattgccatttggttcatatctcttccaggttttgaagctactactattcaccccgacgaaagtatgatatctatttctgctata |
31310511 |
T |
|
| Q |
115 |
-ctaccaaacaataaagaaaattctttcatctttcttttcaagttattttcatctaaggattcatgttagttcaaatatcatgtat |
199 |
Q |
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| T |
31310510 |
gctactaaacaataaagaaacttctttcat-ttttttttcta-ttctttttatctaaggattcatgttag--caaatatcatgtat |
31310429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 31283877 - 31283752
Alignment:
| Q |
72 |
tactattcaccccgacgaaagtatgattcttattattgctata-ctaccaaacaataaagaaaattctttcatctttcttttcaagttattttcatctaa |
170 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||||||| |||||| |||||||||||| |||||| |||||||||||| || | |||| |||||| |
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| T |
31283877 |
tactattcaccccgaggaaagtatgatatctatttctgctatagctaccatacaataaagaaatttctttgatctttcttttctag-tctttttatctaa |
31283779 |
T |
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| Q |
171 |
ggattcatgttagttcaaatatcatgtat |
199 |
Q |
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|||||||||||||| ||||||||||||| |
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| T |
31283778 |
ggattcatgttagt--aaatatcatgtat |
31283752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 31377021 - 31376938
Alignment:
| Q |
15 |
tttcttcctgtcactcattctcatttggttcatatctcaaacatcttttggagctaatactattcaccccgacgaaagtatgat |
98 |
Q |
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||||||||| || |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
31377021 |
tttcttcctttccctcattctcatttggttcatatctttaactgtttttggatctaatactattcaccccgacgaaagtatgat |
31376938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 31258175 - 31258082
Alignment:
| Q |
8 |
ctcaatgtttcttcctgtcactcattctcatttggttcatatctcaaacatctttt---ggagctaatactattcaccccgacgaaagtatgat |
98 |
Q |
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|||||| | ||||||| ||||||||| | |||||||||||||||| ||| || || ||||||||||||||||||||||||||||||||||| |
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| T |
31258175 |
ctcaatttctcttcctttcactcattataatttggttcatatctcttacagctattattggagctaatactattcaccccgacgaaagtatgat |
31258082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 246
Target Start/End: Complemental strand, 31258020 - 31257942
Alignment:
| Q |
168 |
taaggattcatgttagttcaaatatcatgtattattttttgctcatgtagaaattctgtatatatatttaatgacatgt |
246 |
Q |
| |
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||||||||| |||||| | |||||||||||||| | ||||||| || |||||||||||||||||| ||| ||||||||| |
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| T |
31258020 |
taaggattcctgttaggttaaatatcatgtattttcttttgctgatatagaaattctgtatatatgtttgatgacatgt |
31257942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 31389241 - 31389178
Alignment:
| Q |
35 |
tcatttggttcatatctcaaacatcttttggagctaatactattcaccccgacgaaagtatgat |
98 |
Q |
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|||||||||| ||||||| |||| |||||||||| | |||||||||||| || ||||||||||| |
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| T |
31389241 |
tcatttggtttatatctctaacagcttttggagcaactactattcaccctgatgaaagtatgat |
31389178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 31416140 - 31416230
Alignment:
| Q |
8 |
ctcaatgtttcttcctgtcactcattctcatttggttcatatctcaaacatcttttggagctaatactattcaccccgacgaaagtatgat |
98 |
Q |
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| T |
31416140 |
ctcaatttctcttcctttcactcatttccatttggttcatatctcttacagcttttgctgccactactattcaccctgatgaaagtatgat |
31416230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 31310257 - 31310225
Alignment:
| Q |
226 |
tatatatatttaatgacatgtgtgtgtagttta |
258 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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| T |
31310257 |
tatatatatttgatgacatgtgtgtgtagttta |
31310225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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