View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12740_low_36 (Length: 282)

Name: NF12740_low_36
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12740_low_36
NF12740_low_36
[»] chr2 (8 HSPs)
chr2 (21-269)||(17650654-17650902)
chr2 (21-246)||(17698711-17698936)
chr2 (22-269)||(17641990-17642237)
chr2 (21-246)||(17660882-17661107)
chr2 (21-246)||(17711923-17712148)
chr2 (21-250)||(17617057-17617286)
chr2 (198-248)||(17722405-17722455)
chr2 (198-248)||(17708008-17708058)
[»] chr3 (5 HSPs)
chr3 (73-241)||(5924773-5924941)
chr3 (85-241)||(5978091-5978247)
chr3 (85-241)||(5984064-5984220)
chr3 (85-269)||(5918460-5918644)
chr3 (85-221)||(5906240-5906376)
[»] chr4 (1 HSPs)
chr4 (67-269)||(4208622-4208824)
[»] chr8 (1 HSPs)
chr8 (70-218)||(31903836-31903984)
[»] chr6 (2 HSPs)
chr6 (172-230)||(29467800-29467858)
chr6 (154-191)||(29761207-29761244)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 17650902 - 17650654
Alignment:
Q  21 atcgacatcataaaaaactggcaaaagcaagcgtctatgtgtgttggaacagtcaaggatcatgacaagttcattcaagcaaaaagttgatgaagcatag 120  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17650902 atcgacatcataaaaaaccggcaaaagcaagcgtctacgtgtgttggaacactcaaggatcatgacaagttcattcaagcaaaaagttgatgaagcatag 17650803  T
Q  121 ttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaagtgatggtgtgatttcttctcccttttgaatttcttcttcatcaatga 220  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17650802 ttgctagagaaaacaacaatgtagattctagattgttgaatagcttgaagaagtgatggtgtgatttcttctcccttttgaatttctttttcatcaatga 17650703  T
Q  221 acgtatgaatacctttttgatcaagagaattgaaaaggctaccagtgaa 269  Q
    | || ||||||||||||||||||||||||||| | ||||||||||||||    
T  17650702 aagtgtgaatacctttttgatcaagagaattgtagaggctaccagtgaa 17650654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 17698936 - 17698711
Alignment:
Q  21 atcgacatcataaaaaactggcaaaagcaagcgtctatgtgtgttggaacagtcaaggatcatgacaagttcattcaagcaaaaagttgatgaagcatag 120  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  17698936 atcgacgtcataaaaaaccggcaaaagcaagcgtctatgtgtgttggaacagtcaaggatcatgacaagttcattcaagcaaaaagtagaggaagcatag 17698837  T
Q  121 ttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaagtgatggtgtgatttcttctcccttttgaatttcttcttcatcaatga 220  Q
    ||| ||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| ||    
T  17698836 ttgttagagaaaacaacaatgaaaattctagattgttgaatagcttgaagaagtgatggtgtgatctcttctcctttttgaatttcttgttcatcaaaga 17698737  T
Q  221 acgtatgaatacctttttgatcaaga 246  Q
    | || |||||||| ||||||||||||    
T  17698736 aagtgtgaataccgttttgatcaaga 17698711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 17642237 - 17641990
Alignment:
Q  22 tcgacatcataaaaaactggcaaaagcaagcgtctatgtgtgttggaacagtcaaggatcatgacaagttcattcaagcaaaaagttgatgaagcatagt 121  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| | ||||||||||||| ||||||||||| ||||||||||    
T  17642237 tcgacatcataaaaaacgggcaaaagcaagcgtccatgtgtgttggaacactcaaggatcacggcaagttcattcaaacaaaaagttgaggaagcatagt 17642138  T
Q  122 tgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaagtgatggtgtgatttcttctcccttttgaatttcttcttcatcaatgaa 221  Q
    || ||||||||||||||||| | ||||||||||||||||||||||||| ||||| | |||| |||| |||||| |||||||||||||||||||||| |||    
T  17642137 tgttagagaaaacaacaatgaaaatcctagattgttgaattgcttgaaaaagtgctcgtgttatttgttctcctttttgaatttcttcttcatcaaggaa 17642038  T
Q  222 cgtatgaatacctttttgatcaagagaattgaaaaggctaccagtgaa 269  Q
     || |||||||| |||||||||||||||||| | ||| ||||||||||    
T  17642037 agtgtgaatacccttttgatcaagagaattgtagaggttaccagtgaa 17641990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 17661107 - 17660882
Alignment:
Q  21 atcgacatcataaaaaactggcaaaagcaagcgtctatgtgtgttggaacagtcaaggatcatgacaagttcattcaagcaaaaagttgatgaagcatag 120  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||    
T  17661107 atcgacatcataaaaaacaggcaaaagcaagcgtccatgtgtgttggaacagtcaaggatcacaacaagttcattcaaacaaaaagttgaggaagcatag 17661008  T
Q  121 ttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaagtgatggtgtgatttcttctcccttttgaatttcttcttcatcaatga 220  Q
    ||| ||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||| ||    
T  17661007 ttgttagagaaaacaacaatgaaaatcctagattgttgaattgcttgaaaaagtgctggtgtgatctcttctcccttttgaatttgttcttcatcaaaga 17660908  T
Q  221 acgtatgaatacctttttgatcaaga 246  Q
    | || |||||||| ||||||| ||||    
T  17660907 aagtgtgaataccgttttgataaaga 17660882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 17712148 - 17711923
Alignment:
Q  21 atcgacatcataaaaaactggcaaaagcaagcgtctatgtgtgttggaacagtcaaggatcatgacaagttcattcaagcaaaaagttgatgaagcatag 120  Q
    ||||||||||||||| || ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||    
T  17712148 atcgacatcataaaatacaggcaaaaacaagcgtccatgtgtgttggaacactcaaggatcatgacaagttcattcaaacaaaaagtagaggaagcatag 17712049  T
Q  121 ttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaagtgatggtgtgatttcttctcccttttgaatttcttcttcatcaatga 220  Q
    ||| ||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| ||    
T  17712048 ttgttagagaaaacaacaatgaaaatcctagattgttgaatagcttgaagaagtgatggtgtgatctcttctcctttttgaatttcttgttcatcaaaga 17711949  T
Q  221 acgtatgaatacctttttgatcaaga 246  Q
    | || |||||||| ||||||||||||    
T  17711948 aagtgtgaataccgttttgatcaaga 17711923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 17617286 - 17617057
Alignment:
Q  21 atcgacatcataaaaaactggcaaaagcaagcgtctatgtgtgttggaacagtcaaggatcatgacaagttcattcaagcaaaaagttgatgaagcatag 120  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||| || |||||||||    
T  17617286 atcgacatcataaaaaacgggcaaaagcaagcgtccatgtgtgttggaacagtcaaggatcaaggcaagttcattcaaacaaaaagtagaggaagcatag 17617187  T
Q  121 ttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaagtgatggtgtgatttcttctcccttttgaatttcttcttcatcaatga 220  Q
    ||| ||||||||||||||||| | ||||||||||||||||||||||||| ||| | |||||| |||| |||||| |||||||||| || |||||||| ||    
T  17617186 ttgttagagaaaacaacaatgaaaatcctagattgttgaattgcttgaaaaagggctggtgtaatttgttctcctttttgaatttgtttttcatcaaaga 17617087  T
Q  221 acgtatgaatacctttttgatcaagagaat 250  Q
    | || |||||||| |||||||| |||||||    
T  17617086 aagtgtgaataccgttttgatctagagaat 17617057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 17722455 - 17722405
Alignment:
Q  198 ttgaatttcttcttcatcaatgaacgtatgaatacctttttgatcaagaga 248  Q
    ||||||||||||| |||||||||| || |||||||| ||||||||||||||    
T  17722455 ttgaatttcttctacatcaatgaaagtgtgaatacccttttgatcaagaga 17722405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 17708058 - 17708008
Alignment:
Q  198 ttgaatttcttcttcatcaatgaacgtatgaatacctttttgatcaagaga 248  Q
    |||||| |||||| |||||||||| || |||||||| ||||||||||||||    
T  17708058 ttgaatatcttctacatcaatgaaagtgtgaatacccttttgatcaagaga 17708008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 241
Target Start/End: Original strand, 5924773 - 5924941
Alignment:
Q  73 tcaaggatcatgacaagttcattcaagcaaaaagttgatgaagcatagttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaa 172  Q
    ||||||||  ||||||||||| |||| ||||| ||||| || ||||||||    ||||||| | ||||| | |||||||||| || ||| ||||||||||    
T  5924773 tcaaggatggtgacaagttcagtcaaacaaaacgttgaagatgcatagttaggtgagaaaatagcaatgaaaatcctagattcttcaatggcttgaagaa 5924872  T
Q  173 gtgatggtgtgatttcttctcccttttgaatttcttcttcatcaatgaacgtatgaatacctttttgat 241  Q
    | |  ||||||||||||||||| |||||||||||||| ||||| || || || || |||||| ||||||    
T  5924873 gagtaggtgtgatttcttctcctttttgaatttcttcatcatccataaaagtttgtatacctctttgat 5924941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 5978091 - 5978247
Alignment:
Q  85 acaagttcattcaagcaaaaagttgatgaagcatagttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaagtgatggtgtga 184  Q
    ||||||||| |||| ||||| ||||| || ||||||||    ||||||| | ||||| | || |||||||||| ||| ||||||||||| |  |||||||    
T  5978091 acaagttcagtcaaacaaaacgttgaagatgcatagttaggggagaaaatagcaatgaaaattctagattgtttaatggcttgaagaagagtaggtgtga 5978190  T
Q  185 tttcttctcccttttgaatttcttcttcatcaatgaacgtatgaatacctttttgat 241  Q
    |||||||||| |||||||||||||| ||||| || || || || |||||| ||||||    
T  5978191 tttcttctcctttttgaatttcttcatcatccataaaagtttgtatacctctttgat 5978247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 241
Target Start/End: Original strand, 5984064 - 5984220
Alignment:
Q  85 acaagttcattcaagcaaaaagttgatgaagcatagttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaagtgatggtgtga 184  Q
    ||||||||| |||| ||||| ||||| || ||||||||    ||||||| | ||||| | || |||||||||| ||| ||||||||||| |  |||||||    
T  5984064 acaagttcagtcaaacaaaacgttgaagatgcatagttaggggagaaaatagcaatgaaaattctagattgtttaatggcttgaagaagagtaggtgtga 5984163  T
Q  185 tttcttctcccttttgaatttcttcttcatcaatgaacgtatgaatacctttttgat 241  Q
    |||||||||| |||||||||||||| ||||| || || || || |||||| ||||||    
T  5984164 tttcttctcctttttgaatttcttcatcatccataaaagtttgtatacctctttgat 5984220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 269
Target Start/End: Original strand, 5918460 - 5918644
Alignment:
Q  85 acaagttcattcaagcaaaaagttgatgaagcatagttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaagtgatggtgtga 184  Q
    ||||||||| |||| || |||||||| || ||||||||  | || |||||||||||| | || || |||| ||  || ||||||||||| |  ||||| |    
T  5918460 acaagttcagtcaaacagaaagttgaagatgcatagttagtggaaaaaacaacaatgaaaattctggattctttgatggcttgaagaagagtaggtgtaa 5918559  T
Q  185 tttcttctcccttttgaatttcttcttcatcaatgaacgtatgaatacctttttgatcaagagaattgaaaaggctaccagtgaa 269  Q
    |||||||||| ||||| |||||||| ||||||| ||| ||  | |||||| ||||||  ||||||||| | ||| ||||||||||    
T  5918560 tttcttctcctttttgtatttcttcatcatcaaagaatgttcgtatacctctttgattgagagaattgtagaggttaccagtgaa 5918644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 221
Target Start/End: Original strand, 5906240 - 5906376
Alignment:
Q  85 acaagttcattcaagcaaaaagttgatgaagcatagttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaagaagtgatggtgtga 184  Q
    ||||||||| |||| ||||||||||| || ||||||||    || |||| | ||||| | |||||||||| || ||| |||| |||||| |  ||||| |    
T  5906240 acaagttcagtcaaacaaaaagttgaagatgcatagttaggggacaaaatagcaatgaaaatcctagattctttaatggctttaagaagagtgggtgtta 5906339  T
Q  185 tttcttctcccttttgaatttcttcttcatcaatgaa 221  Q
    |||||||||| ||||| |||||||| || ||||||||    
T  5906340 tttcttctcctttttgtatttcttcatcgtcaatgaa 5906376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 269
Target Start/End: Original strand, 4208622 - 4208824
Alignment:
Q  67 gaacagtcaaggatcatgacaagttcattcaagcaaaaagttgatgaagcatagttgctagagaaaacaacaatgtagatcctagattgttgaattgctt 166  Q
    ||||| ||||||||  | ||||||||| |||| ||||||||||| || ||||||||  | || |||||| ||||| | |||||||||| ||  || ||||    
T  4208622 gaacactcaaggatggtaacaagttcagtcaaacaaaaagttgaagatgcatagttagtggaaaaaacagcaatgaaaatcctagattatttgatggctt 4208721  T
Q  167 gaagaagtgatggtgtgatttcttctcccttttgaatttcttcttcatcaatgaacgtatgaatacctttttgatcaagagaattgaaaaggctaccagt 266  Q
    ||||||| |   |||| ||||||||||| ||||||||||||| |||||||| ||| || |  |||||| ||||||  ||||||||| | ||  |||||||    
T  4208722 gaagaagagtatgtgttatttcttctcctttttgaatttcttgttcatcaaagaaagtttttatacctctttgattgagagaattgtagagattaccagt 4208821  T
Q  267 gaa 269  Q
    |||    
T  4208822 gaa 4208824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 31903984 - 31903836
Alignment:
Q  70 cagtcaaggatcatgacaagttcattcaagcaaaaagttgatgaagcatagttgctagagaaaacaacaatgtagatcctagattgttgaattgcttgaa 169  Q
    |||||||||||| ||||||||||||  |||||||| |  || |||||||||||  ||||||  |||| ||||   |||||||| | || |||||| |  |    
T  31903984 cagtcaaggatcttgacaagttcatgtaagcaaaatgaagaagaagcatagtttttagagagcacaataatggcaatcctagactcttcaattgcctcta 31903885  T
Q  170 gaagtgatggtgtgatttcttctcccttttgaatttcttcttcatcaat 218  Q
     |||||||||||||||||| | |||  |||||| |||||| || |||||    
T  31903884 aaagtgatggtgtgatttcatgtcctctttgaagttcttcatcgtcaat 31903836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 29467858 - 29467800
Alignment:
Q  172 agtgatggtgtgatttcttctcccttttgaatttcttcttcatcaatgaacgtatgaat 230  Q
    |||||||||||||||||||| || ||||||| |||||| ||||| ||||| || |||||    
T  29467858 agtgatggtgtgatttcttcgcctttttgaagttcttcatcatccatgaaggtgtgaat 29467800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 29761207 - 29761244
Alignment:
Q  154 tgttgaattgcttgaagaagtgatggtgtgatttcttc 191  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  29761207 tgttcaattgctttaagaagtgatggtgtgatttcttc 29761244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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