View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_39 (Length: 264)
Name: NF12740_low_39
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_39 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 28663269 - 28663523
Alignment:
| Q |
10 |
cacagacacatcacaccaaaatggatcgtctgcaacaagttttacggtgcaacgtagtaggagaaatatctctattgcaccgtaaagtcgattgtagagg |
109 |
Q |
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| T |
28663269 |
cacacacacatcacaccaaaatggatcgtctgcaacaagttttacggtgcaacgtagtaggagaaatatctctactgcaccgtaaagttgattgtagagg |
28663368 |
T |
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| Q |
110 |
atctaagttacgaaaaagtatgcatataagttggatatacctgtaatccagtgttgtcctcacactctttatcatcaaggcgatactcatgcataaccca |
209 |
Q |
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| T |
28663369 |
atctaagttacgaaaaagtatgcatataagttgtatatacctgtaatccagtgttgtcctcacactctttatcatcaaggcgatactcatgcataaccca |
28663468 |
T |
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| Q |
210 |
atcagttcgaattccttgaggagctcttcctctatagtaaaccaatgtcttcttc |
264 |
Q |
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| T |
28663469 |
atcagttcgaattccttgaggagctcttcctctatagtaaaccaatgtcttcttc |
28663523 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 29103227 - 29103157
Alignment:
| Q |
181 |
tcatcaaggcgatactcatgcataacccaatcagttcgaattccttgaggagctcttcctctatagtaaac |
251 |
Q |
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| T |
29103227 |
tcatcaagacgatactcatgcataacccaaccagtgcgagatccatgtggtgctcttcctctatagtaaac |
29103157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 39134469 - 39134428
Alignment:
| Q |
178 |
ttatcatcaaggcgatactcatgcataacccaatcagttcga |
219 |
Q |
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| T |
39134469 |
ttatcttcaagcctatactcatgcataacccaatcagttcga |
39134428 |
T |
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