View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12740_low_4 (Length: 546)
Name: NF12740_low_4
Description: NF12740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12740_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 44647047 - 44646528
Alignment:
| Q |
18 |
cttttgagttctctggaacatgcgatgaaataattcactatccatgatatacttaaaagcttgctgaagcagaattgagaacattcaattcatgtttctg |
117 |
Q |
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| T |
44647047 |
cttttgagttctctggaacatgcgatgaaataattcactatccatgatatatttaaaagcttgctgaagcagaattgagaacattcaattcatgtttctg |
44646948 |
T |
|
| Q |
118 |
gtgataaatcaacatcattgatttaagttttgtcatatatattcatggatatagtaaactgtgctatttgatcctttttatacaatccatcttaaacaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646947 |
gtgataaatcaacatcattgatttaagttttgtcatatatattcatggatatagtaaactgtgctatttgatcctttttatacaatccatcttaaacaga |
44646848 |
T |
|
| Q |
218 |
acctgaaggttcctttccattcactaacatatggatagtttattttccatttgcaaaactagtacactgaaaaagttatattaggattattggctttgta |
317 |
Q |
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| T |
44646847 |
acctgaaggttcctttccattcactaacacatggatagtttattttccatttgcaaaactagtacactgaaaaagttatattaggattattggctttgta |
44646748 |
T |
|
| Q |
318 |
tgtgcttatgactgattattaactatgatcacaaaattgttgaaatatctatctatttatactatttaatttctgaagcgcctgcgattggatttatcat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44646747 |
tgtgcttatgactgattattaactatgatcacaaaattgttgaaatatctatctatttatactatttaatttctgaaccgcctgcgattggatttatcat |
44646648 |
T |
|
| Q |
418 |
atattttctgaaggcagaaagtgcctcctccgattcctaacactttctgccttctccgattccttgacggctctctcacactattttaataatctgaatg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44646647 |
atattttctgaaggcagaaagtgcctcctccgattcctaacactttctgccttctccgattccttgacggctctctcacactattttaataatctgaatg |
44646548 |
T |
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| Q |
518 |
tgaagaaaaccagcctttgc |
537 |
Q |
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| T |
44646547 |
tgaagaaaaccagcctttgc |
44646528 |
T |
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